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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • plastid 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G078790.1 Barley cytosol 25.93 68.48
Os02t0762300-01 Rice cytosol 83.13 55.65
EES07570 Sorghum cytosol 83.13 55.49
TraesCS5A01G214500.1 Wheat mitochondrion 81.89 55.28
TraesCS5D01G217500.1 Wheat mitochondrion 81.89 55.28
TraesCS5B01G209300.1 Wheat mitochondrion 81.48 55.0
Os01t0598900-00 Rice cytosol 73.25 54.77
Zm00001d018148_P003 Maize cytosol 83.13 49.88
HORVU5Hr1G061960.1 Barley cytosol 81.89 47.84
GSMUA_Achr7P03970_001 Banana cytosol, mitochondrion, plastid 3.7 6.67
Protein Annotations
MapMan:16.6.5.1.4.1Gene3D:3.40.50.620GO:GO:0000049GO:GO:0002098GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488GO:GO:0006139GO:GO:0008033GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0034227EnsemblPlantsGene:GSMUA_Achr7G03980_001EnsemblPlants:GSMUA_Achr7P03980_001EnsemblPlants:GSMUA_Achr7T03980_001InterPro:IPR014729
UniProt:M0TEI8InterPro:Ncs6/Tuc1/Ctu1PFAM:PF01171PIRSF:PIRSF004976PANTHER:PTHR11807PANTHER:PTHR11807:SF12
InterPro:Rossmann-like_a/b/a_foldSUPFAM:SSF52402InterPro:TilS/TtcA_NUniParc:UPI0002961D18SEG:segInterPro:tRNA_thiolation_TtcA_Ctu1
Description
Cytoplasmic tRNA 2-thiolation protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03980_001]
Coordinates
chr7:-:3081235..3093845
Molecular Weight (calculated)
27456.0 Da
IEP (calculated)
7.652
GRAVY (calculated)
-0.278
Length
243 amino acids
Sequence
(BLAST)
001: MEEGGATARP RRATGRLCST CNQRKAALKR PKTLEQICRE CFYSVFEDEI HNVIMDNNLF KPGERVAVAA SGGKDSTVLA YVMSELNRRH NYGLDLFLLS
101: VDEGITGYRD DSLETVKRNE IEYGLPLKVV SYKDLYGWTM DEIVKTIGLK NNCTFCGVFR RQALDRGAAL LKADKLVTGH NADDIAETVL LNILRGDIAR
201: LSRCTFITTG EDGPIPRCKP FKYTYEKEIY YVCIFQEAGL FLH
Best Arabidopsis Sequence Match ( AT2G44270.1 )
(BLAST)
001: MEAKNKKAVA SRLCCLCNLR RPVLKRPKTL QQICRECFYE VFEEEIHQVI VQNRLFKSGE RVAIGASGGK DSTVLAYVLS ELNRRHNYGL DLFLLSIDEG
101: ITGYRDDSLE TVKRNEVQYG LPLKIVSYKD LYGWTMDEIV KMIGLKNNCT FCGVFRRQAL DRGAALLKVE KLVTGHNADD IAETVLLNIL RGDIARLSRC
201: TSITTGEDGP IPRCKPFKYT YEKEIVMYAY FKKLDYFSTE CIYSPNAYRG FAREFIKDLE RIRPRAILDI IKSGEDFRIA TTTKMPEQGT CERCGYISSQ
301: KWCKACVLLE GLNRGLPKMG IGRPRGVNGD HNKETKKPGS VAKSIESKQC GSLDF
Arabidopsis Description
NCS6Cytoplasmic tRNA 2-thiolation protein 1 [Source:UniProtKB/TrEMBL;Acc:A0A178VUZ0]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.