CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G400500.1	Wheat	endoplasmic reticulum, extracellular	74.64	89.57
TraesCS5A01G390700.1	Wheat	endoplasmic reticulum, extracellular	74.64	89.57
Os03t0751000-01	Rice	extracellular, plastid	76.09	87.5
KRH14784	Soybean	cytosol	47.1	83.33
GSMUA_Achr6P35050_001	Banana	cytosol	65.94	81.98
KRH73358	Soybean	cytosol	63.77	79.28
Bra015157.1-P	Field mustard	plastid	63.04	78.38
Solyc07g047700.2.1	Tomato	cytosol	62.32	77.48
Zm00001d050535_P001	Maize	cytosol	63.77	73.95
GSMUA_Achr6P35060_001	Banana	cytosol, extracellular, plastid	60.87	73.04
CDY00884	Canola	cytosol, mitochondrion, plastid	63.77	68.75
CDY27860	Canola	cytosol, mitochondrion, plastid	63.04	67.97
AT2G04900.1	Thale cress	plastid	63.04	67.97
Zm00001d040070_P001	Maize	extracellular, plastid	57.25	67.52
VIT_12s0059g01530.t01	Wine grape	cytosol, extracellular	55.8	64.71
VIT_12s0059g01490.t01	Wine grape	mitochondrion	55.07	64.41
PGSC0003DMT400015679	Potato	mitochondrion	64.49	62.24
CDY05730	Canola	extracellular	26.09	48.65
CDY05068	Canola	extracellular	26.09	48.65
Zm00001d030155_P001	Maize	cytosol	61.59	34.84
Zm00001d024394_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	56.52	24.22

Protein Annotations

EnsemblPlants:OQU90981	EnsemblPlantsGene:SORBI_3001G087900	EntrezGene:8086242	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF423	PANTHER:PTHR43461	PFAM:PF04241	ProteinID:OQU90981	ProteinID:OQU90981.1	RefSeq:XP_002466451.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A82682	UniProt:A0A1Z5S4X9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr1:-:6841876..6842927

Molecular Weight (calculated)

15051.7 Da

IEP (calculated)

11.027

GRAVY (calculated)

0.168

Length

138 amino acids

Sequence
(BLAST)

001: MLKQTAVVAS QRRPKRRTKE KRKMVAPMDP MLWHKVAAVS GIAALGLGTY GAHMFRPKNP AYKEVWHTAS LYHLVHTAAL LGAPITKRPN VFGGLLTAGI
101: VLFSGTCYTV AYLEDRKLSS PAPLGGFAFI AAWASLLF

Best Arabidopsis Sequence Match ( AT2G04900.1 )
(BLAST)

001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.