Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G400500.1 | Wheat | endoplasmic reticulum, extracellular | 30.74 | 65.22 |
| TraesCS5A01G390700.1 | Wheat | endoplasmic reticulum, extracellular | 30.74 | 65.22 |
| OQU90981 | Sorghum | mitochondrion | 34.84 | 61.59 |
| Os03t0751000-01 | Rice | extracellular, plastid | 29.92 | 60.83 |
| Zm00001d050535_P001 | Maize | cytosol | 29.51 | 60.5 |
| Solyc07g047700.2.1 | Tomato | cytosol | 27.05 | 59.46 |
| GSMUA_Achr6P35050_001 | Banana | cytosol | 26.64 | 58.56 |
| KRH73358 | Soybean | cytosol | 26.23 | 57.66 |
| Bra015157.1-P | Field mustard | plastid | 25.41 | 55.86 |
| Zm00001d040070_P001 | Maize | extracellular, plastid | 25.82 | 53.85 |
| KRH14784 | Soybean | cytosol | 16.8 | 52.56 |
| VIT_12s0059g01530.t01 | Wine grape | cytosol, extracellular | 25.41 | 52.1 |
| GSMUA_Achr6P35060_001 | Banana | cytosol, extracellular, plastid | 24.18 | 51.3 |
| VIT_12s0059g01490.t01 | Wine grape | mitochondrion | 24.18 | 50.0 |
| CDY00884 | Canola | cytosol, mitochondrion, plastid | 25.41 | 48.44 |
| CDY27860 | Canola | cytosol, mitochondrion, plastid | 25.0 | 47.66 |
| AT2G04900.1 | Thale cress | plastid | 25.0 | 47.66 |
| PGSC0003DMT400015679 | Potato | mitochondrion | 27.87 | 47.55 |
| CDY05730 | Canola | extracellular | 12.7 | 41.89 |
| CDY05068 | Canola | extracellular | 12.7 | 41.89 |
| Zm00001d024394_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 22.54 | 17.08 |
| Zm00001d045280_P001 | Maize | extracellular | 4.92 | 10.81 |
Protein Annotations
| EnsemblPlants:Zm00001d030155_P001 | EnsemblPlants:Zm00001d030155_T001 | EnsemblPlantsGene:Zm00001d030155 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ProteinID:ONM00406.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000844FDFB | UniProt:A0A1D6KAA3 | MapMan:35.2 |
Description
UPF0451 C17orf61-like protein
Coordinates
chr1:-:109359801..109361667
Molecular Weight (calculated)
28407.3 Da
IEP (calculated)
9.844
GRAVY (calculated)
-0.282
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLKLCPAND QLVVTRYNSW DEINTREKRK MLAATDLMLW HKVTTVSGNP PFFFTLFTPD QRAKRKGVIQ NYRSFFSLRS NGLAHIVPVP SHPHRGAAWG
101: AHHQAPQRCE YQSCPLQYFC CCGTSRLIYK EVEGELERRG RCWWRRIRGC GTRSPPSPVW HTTSLYHLVH TTALLGAPIT KRPNVWRAPH YWNCALLWNR
201: IYNFVRCYTV AYLEDRKFSS PAPLGGFAFI AAWASLLCVY YVWY
101: AHHQAPQRCE YQSCPLQYFC CCGTSRLIYK EVEGELERRG RCWWRRIRGC GTRSPPSPVW HTTSLYHLVH TTALLGAPIT KRPNVWRAPH YWNCALLWNR
201: IYNFVRCYTV AYLEDRKFSS PAPLGGFAFI AAWASLLCVY YVWY
001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF
101: ALREDRKFST LAPFGGFAFI AAWATLLF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.