Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 3
- extracellular 3
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G400500.1 | Wheat | endoplasmic reticulum, extracellular | 100.0 | 100.0 |
| GSMUA_Achr6P35050_001 | Banana | cytosol | 78.26 | 81.08 |
| Os03t0751000-01 | Rice | extracellular, plastid | 84.35 | 80.83 |
| Bra015157.1-P | Field mustard | plastid | 75.65 | 78.38 |
| KRH14784 | Soybean | cytosol | 52.17 | 76.92 |
| Solyc07g047700.2.1 | Tomato | cytosol | 73.91 | 76.58 |
| KRH73358 | Soybean | cytosol | 72.17 | 74.77 |
| OQU90981 | Sorghum | mitochondrion | 89.57 | 74.64 |
| GSMUA_Achr6P35060_001 | Banana | cytosol, extracellular, plastid | 73.04 | 73.04 |
| Zm00001d050535_P001 | Maize | cytosol | 73.04 | 70.59 |
| CDY00884 | Canola | cytosol, mitochondrion, plastid | 75.65 | 67.97 |
| CDY27860 | Canola | cytosol, mitochondrion, plastid | 74.78 | 67.19 |
| AT2G04900.1 | Thale cress | plastid | 74.78 | 67.19 |
| Zm00001d040070_P001 | Maize | extracellular, plastid | 67.83 | 66.67 |
| VIT_12s0059g01490.t01 | Wine grape | mitochondrion | 67.83 | 66.1 |
| VIT_12s0059g01530.t01 | Wine grape | cytosol, extracellular | 67.83 | 65.55 |
| PGSC0003DMT400015679 | Potato | mitochondrion | 74.78 | 60.14 |
| CDY05730 | Canola | extracellular | 32.17 | 50.0 |
| CDY05068 | Canola | extracellular | 32.17 | 50.0 |
| Zm00001d030155_P001 | Maize | cytosol | 65.22 | 30.74 |
| Zm00001d024394_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 66.09 | 23.6 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G390700.1 | EnsemblPlantsGene:TraesCS5A01G390700 | InterPro:DUF423 | PANTHER:PTHR43461 | PFAM:PF04241 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:586141030..586141815
Molecular Weight (calculated)
12475.4 Da
IEP (calculated)
9.819
GRAVY (calculated)
0.417
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMPTDPMLW HKVAAVSGVA ALGLGTYGAH MFRPQNPRYK EIWQTASLYH LVHTAALLGA PMTKRPNIFG GLLTTGIVLF SGTCYTVAYL EDRKFSSPAP
101: IGGFAFIAAW ASLLF
101: IGGFAFIAAW ASLLF
001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF
101: ALREDRKFST LAPFGGFAFI AAWATLLF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.