CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015157.1-P	Field mustard	plastid	86.72	100.0
CDY27860	Canola	cytosol, mitochondrion, plastid	99.22	99.22
AT2G04900.1	Thale cress	plastid	96.09	96.09
KRH14784	Soybean	cytosol	50.78	83.33
KRH73358	Soybean	cytosol	68.75	79.28
Solyc07g047700.2.1	Tomato	cytosol	68.75	79.28
GSMUA_Achr6P35050_001	Banana	cytosol	67.19	77.48
TraesCS5D01G400500.1	Wheat	endoplasmic reticulum, extracellular	67.97	75.65
TraesCS5A01G390700.1	Wheat	endoplasmic reticulum, extracellular	67.97	75.65
GSMUA_Achr6P35060_001	Banana	cytosol, extracellular, plastid	64.06	71.3
Os03t0751000-01	Rice	extracellular, plastid	65.62	70.0
VIT_12s0059g01490.t01	Wine grape	mitochondrion	62.5	67.8
VIT_12s0059g01530.t01	Wine grape	cytosol, extracellular	61.72	66.39
OQU90981	Sorghum	mitochondrion	68.75	63.77
PGSC0003DMT400015679	Potato	mitochondrion	70.31	62.94
CDY05730	Canola	extracellular	34.38	59.46
CDY05068	Canola	extracellular	34.38	59.46
Zm00001d050535_P001	Maize	cytosol	53.91	57.98
Zm00001d040070_P001	Maize	extracellular, plastid	50.78	55.56
Zm00001d030155_P001	Maize	cytosol	48.44	25.41
Zm00001d024394_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	50.0	19.88

Protein Annotations

EnsemblPlants:CDY00884	EnsemblPlantsGene:GSBRNA2T00110851001	GO:A0A078EJE3	InterPro:DUF423	PANTHER:PTHR43461	PFAM:PF04241
ProteinID:CDY00884	ProteinID:CDY00884.1	TMHMM:TMhelix	UniParc:UPI0004EE16B6	MapMan:35.2	:

Description

BnaCnng00840D

Coordinates

chrLK031922:+:1036728..1038102

Molecular Weight (calculated)

13841.8 Da

IEP (calculated)

10.248

GRAVY (calculated)

0.248

Length

128 amino acids

Sequence
(BLAST)

001: MGNCVRSNLR DLGGRRSMDP RIWHKVAAVS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF

Best Arabidopsis Sequence Match ( AT2G04900.1 )
(BLAST)

001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.