Factsheet for PGSC0003DMT400015679

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g047700.2.1	Tomato	cytosol	75.52	97.3
KRH14784	Soybean	cytosol	46.85	85.9
KRH73358	Soybean	cytosol	64.34	82.88
Bra015157.1-P	Field mustard	plastid	62.94	81.08
GSMUA_Achr6P35050_001	Banana	cytosol	60.84	78.38
TraesCS5A01G390700.1	Wheat	endoplasmic reticulum, extracellular	60.14	74.78
TraesCS5D01G400500.1	Wheat	endoplasmic reticulum, extracellular	60.14	74.78
Os03t0751000-01	Rice	extracellular, plastid	61.54	73.33
GSMUA_Achr6P35060_001	Banana	cytosol, extracellular, plastid	57.34	71.3
VIT_12s0059g01530.t01	Wine grape	cytosol, extracellular	58.74	70.59
VIT_12s0059g01490.t01	Wine grape	mitochondrion	58.04	70.34
CDY00884	Canola	cytosol, mitochondrion, plastid	62.94	70.31
AT2G04900.1	Thale cress	plastid	62.94	70.31
CDY27860	Canola	cytosol, mitochondrion, plastid	62.24	69.53
OQU90981	Sorghum	mitochondrion	62.24	64.49
Zm00001d050535_P001	Maize	cytosol	50.35	60.5
Zm00001d040070_P001	Maize	extracellular, plastid	43.36	52.99
CDY05730	Canola	extracellular	27.27	52.7
CDY05068	Canola	extracellular	27.27	52.7
Zm00001d030155_P001	Maize	cytosol	47.55	27.87
Zm00001d024394_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	42.66	18.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400015679	EnsemblPlantsGene:PGSC0003DMG400006126	EntrezGene:102589841	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF423	PANTHER:PTHR43461	PFAM:PF04241	PGSC:PGSC0003DMG400006126	RefSeq:XP_006363001.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002955EFD	UniProt:M1A6E0	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006126]

Coordinates

chr7:+:44262545..44267693

Molecular Weight (calculated)

15429.9 Da

IEP (calculated)

10.830

GRAVY (calculated)

0.097

Length

143 amino acids

Sequence
(BLAST)

001: MSRGNRLMLR RPNLNKVAKI KTSSSKNQKS SKMDPQIWHK IAAISGVAAV GLGAYGAHGF KPQNPTYKEV WHTASLYHLV HTAALLAAPI TKHPNIFGGL
101: LTGGIMAFSG TCYAVALLED RKYSTLAPFG GFAFIAAWAS LLF

Best Arabidopsis Sequence Match ( AT2G04900.1 )
(BLAST)

001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.