Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G400500.1 | Wheat | endoplasmic reticulum, extracellular | 66.67 | 67.83 |
| TraesCS5A01G390700.1 | Wheat | endoplasmic reticulum, extracellular | 66.67 | 67.83 |
| Os03t0751000-01 | Rice | extracellular, plastid | 64.96 | 63.33 |
| GSMUA_Achr6P35050_001 | Banana | cytosol | 56.41 | 59.46 |
| Bra015157.1-P | Field mustard | plastid | 55.56 | 58.56 |
| OQU90981 | Sorghum | mitochondrion | 67.52 | 57.25 |
| KRH73358 | Soybean | cytosol | 53.85 | 56.76 |
| Solyc07g047700.2.1 | Tomato | cytosol | 52.14 | 54.95 |
| GSMUA_Achr6P35060_001 | Banana | cytosol, extracellular, plastid | 52.99 | 53.91 |
| Zm00001d050535_P001 | Maize | cytosol | 53.85 | 52.94 |
| CDY00884 | Canola | cytosol, mitochondrion, plastid | 55.56 | 50.78 |
| CDY27860 | Canola | cytosol, mitochondrion, plastid | 55.56 | 50.78 |
| KRH14784 | Soybean | cytosol | 33.33 | 50.0 |
| CDY05068 | Canola | extracellular | 31.62 | 50.0 |
| CDY05730 | Canola | extracellular | 31.62 | 50.0 |
| AT2G04900.1 | Thale cress | plastid | 54.7 | 50.0 |
| VIT_12s0059g01530.t01 | Wine grape | cytosol, extracellular | 45.3 | 44.54 |
| VIT_12s0059g01490.t01 | Wine grape | mitochondrion | 44.44 | 44.07 |
| PGSC0003DMT400015679 | Potato | mitochondrion | 52.99 | 43.36 |
| Zm00001d030155_P001 | Maize | cytosol | 53.85 | 25.82 |
| Zm00001d024394_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 63.25 | 22.98 |
| Zm00001d045280_P001 | Maize | extracellular | 11.97 | 12.61 |
Protein Annotations
| EnsemblPlants:Zm00001d040070_P001 | EnsemblPlants:Zm00001d040070_T001 | EnsemblPlantsGene:Zm00001d040070 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF423 | PANTHER:PTHR43461 | PFAM:PF04241 | ProteinID:ONM30487.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0008452409 | UniProt:A0A1D6MMW8 | MapMan:35.2 | : | : | : |
Description
UPF0451 C17orf61-like protein
Coordinates
chr3:-:25784833..25785893
Molecular Weight (calculated)
12373.1 Da
IEP (calculated)
8.738
GRAVY (calculated)
0.426
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVVTDPMLW HKVAAVSGVA ALGLGTYGAH MFRPKNPTFG TQHPCTISST PRCCSGRPSP SAPTLYHGGL LTAGIVLFSG TCYTVAYLED RKFSSPAPLG
101: GFAFIAAWAS LLCVYYV
101: GFAFIAAWAS LLCVYYV
001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF
101: ALREDRKFST LAPFGGFAFI AAWATLLF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.