Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plasma membrane 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0059g01490.t01 | Wine grape | mitochondrion | 93.28 | 94.07 |
| Solyc07g047700.2.1 | Tomato | cytosol | 69.75 | 74.77 |
| KRH14784 | Soybean | cytosol | 47.9 | 73.08 |
| KRH73358 | Soybean | cytosol | 67.23 | 72.07 |
| Bra015157.1-P | Field mustard | plastid | 66.39 | 71.17 |
| TraesCS5D01G400500.1 | Wheat | endoplasmic reticulum, extracellular | 65.55 | 67.83 |
| TraesCS5A01G390700.1 | Wheat | endoplasmic reticulum, extracellular | 65.55 | 67.83 |
| GSMUA_Achr6P35050_001 | Banana | cytosol | 63.03 | 67.57 |
| GSMUA_Achr6P35060_001 | Banana | cytosol, extracellular, plastid | 63.87 | 66.09 |
| Os03t0751000-01 | Rice | extracellular, plastid | 66.39 | 65.83 |
| CDY00884 | Canola | cytosol, mitochondrion, plastid | 66.39 | 61.72 |
| CDY27860 | Canola | cytosol, mitochondrion, plastid | 65.55 | 60.94 |
| AT2G04900.1 | Thale cress | plastid | 65.55 | 60.94 |
| PGSC0003DMT400015679 | Potato | mitochondrion | 70.59 | 58.74 |
| OQU90981 | Sorghum | mitochondrion | 64.71 | 55.8 |
| Zm00001d050535_P001 | Maize | cytosol | 53.78 | 53.78 |
| CDY05730 | Canola | extracellular | 29.41 | 47.3 |
| CDY05068 | Canola | extracellular | 29.41 | 47.3 |
| Zm00001d040070_P001 | Maize | extracellular, plastid | 44.54 | 45.3 |
| Zm00001d030155_P001 | Maize | cytosol | 52.1 | 25.41 |
| Zm00001d024394_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 46.22 | 17.08 |
Protein Annotations
| EntrezGene:100248237 | wikigene:100248237 | MapMan:35.2 | ProteinID:CBI28879 | ProteinID:CBI28879.3 | UniProt:D7TEF6 |
| InterPro:DUF423 | EMBL:FN595765 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100248237 |
| wikigene:LOC100248237 | PFAM:PF04241 | PANTHER:PTHR43461 | TIGR:TC56362 | TMHMM:TMhelix | UniParc:UPI00015CAEF3 |
| ArrayExpress:VIT_12s0059g01530 | EnsemblPlantsGene:VIT_12s0059g01530 | EnsemblPlants:VIT_12s0059g01530.t01 | unigene:Vvi.25023 | RefSeq:XP_002275986 | RefSeq:XP_002275986.1 |
| RefSeq:XP_002276289 | RefSeq:XP_002276289.1 | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:6460400..6462847
Molecular Weight (calculated)
12756.6 Da
IEP (calculated)
9.409
GRAVY (calculated)
0.578
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAAESMMAK LYPWHQVAAV SGAVGIGLGA FGAHVFKPQN PIYKEVWKTA SLYHLVHTAA LLATPVTKHP NIFGGLVTAG ILAFSGSCYT VAYFEDRKYS
101: FLAPFGGLAF IAAWGSLLF
101: FLAPFGGLAF IAAWGSLLF
001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF
101: ALREDRKFST LAPFGGFAFI AAWATLLF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.