Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14784 | Soybean | cytosol | 56.52 | 83.33 |
| GSMUA_Achr6P35050_001 | Banana | cytosol | 73.04 | 75.68 |
| Bra015157.1-P | Field mustard | plastid | 71.3 | 73.87 |
| Solyc07g047700.2.1 | Tomato | cytosol | 71.3 | 73.87 |
| TraesCS5D01G400500.1 | Wheat | endoplasmic reticulum, extracellular | 73.04 | 73.04 |
| TraesCS5A01G390700.1 | Wheat | endoplasmic reticulum, extracellular | 73.04 | 73.04 |
| KRH73358 | Soybean | cytosol | 70.43 | 72.97 |
| Os03t0751000-01 | Rice | extracellular, plastid | 72.17 | 69.17 |
| AT2G04900.1 | Thale cress | plastid | 72.17 | 64.84 |
| VIT_12s0059g01490.t01 | Wine grape | mitochondrion | 66.09 | 64.41 |
| CDY00884 | Canola | cytosol, mitochondrion, plastid | 71.3 | 64.06 |
| VIT_12s0059g01530.t01 | Wine grape | cytosol, extracellular | 66.09 | 63.87 |
| CDY27860 | Canola | cytosol, mitochondrion, plastid | 70.43 | 63.28 |
| OQU90981 | Sorghum | mitochondrion | 73.04 | 60.87 |
| PGSC0003DMT400015679 | Potato | mitochondrion | 71.3 | 57.34 |
| Zm00001d050535_P001 | Maize | cytosol | 57.39 | 55.46 |
| Zm00001d040070_P001 | Maize | extracellular, plastid | 53.91 | 52.99 |
| CDY05730 | Canola | extracellular | 31.3 | 48.65 |
| CDY05068 | Canola | extracellular | 31.3 | 48.65 |
| Zm00001d030155_P001 | Maize | cytosol | 51.3 | 24.18 |
| Zm00001d024394_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 50.43 | 18.01 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P35060_001 | EnsemblPlants:GSMUA_Achr6T35060_001 | EnsemblPlantsGene:GSMUA_Achr6G35060_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF423 | PANTHER:PTHR43461 | PFAM:PF04241 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295BD13 |
| UniProt:M0TCU9 | MapMan:35.2 | : | : | : | : |
Description
Putative UPF0451 protein C17orf61 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr6G35060_001]
Coordinates
chr6:-:33418094..33420373
Molecular Weight (calculated)
12292.9 Da
IEP (calculated)
9.048
GRAVY (calculated)
0.635
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVTIDPKVW HKAAAISGVA ALGLGTYGFH VFSPQNPSFK EVWRTAALYH LVHTAALVGA PITKFPNIFG GLLTAGILAF SGSCYMAAYF EDKNYSFPAP
101: FGGFAFVAAW ASLLF
101: FGGFAFVAAW ASLLF
001: MGNSVRSNLR DIRGRRSMDP RMWHKVAAIS GMAALGLGTY GAHVFKPENP SYKQVWQTAS LYHLVHTAAL VSAPSTKYPN IFGGLLTAGI VAFSGTCYMV
101: ALREDRKFST LAPFGGFAFI AAWATLLF
101: ALREDRKFST LAPFGGFAFI AAWATLLF
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SI36]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.