CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
endoplasmic reticulum 2
nucleus 1
extracellular 1
golgi 1
plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU75676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G42725.1	OQU75676	AT5G24290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027883_P001	Maize	endoplasmic reticulum, plasma membrane	94.86	94.86
TraesCS4B01G293500.1	Wheat	plasma membrane, vacuole	63.08	66.18
TraesCS4D01G292100.1	Wheat	plastid	58.88	63.32
HORVU4Hr1G076460.1	Barley	extracellular, mitochondrion, plasma membrane	26.64	53.27
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	48.13	50.99
GSMUA_Achr6P11570_001	Banana	endoplasmic reticulum, plasma membrane	47.66	48.34
PGSC0003DMT400033837	Potato	plasma membrane	36.45	37.5
Solyc07g041770.1.1	Tomato	nucleus	35.98	37.02
AT3G42725.1	Thale cress	extracellular, plasma membrane	26.64	28.22
KRH02609	Soybean	extracellular, golgi, plasma membrane	37.38	18.06
KRH19316	Soybean	endoplasmic reticulum, vacuole	36.92	17.63
VIT_11s0016g01160.t01	Wine grape	extracellular, golgi, plasma membrane	37.38	15.3

Protein Annotations

EnsemblPlants:EER95403	EnsemblPlantsGene:SORBI_3001G484500	EntrezGene:8082021	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR39113	ProteinID:EER95403	ProteinID:EER95403.1	RefSeq:XP_002468405.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001A82EEF	UniProt:C5WVU2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:75541969..75542613

Molecular Weight (calculated)

22904.0 Da

IEP (calculated)

9.912

GRAVY (calculated)

0.393

Length

214 amino acids

Sequence
(BLAST)

001: MASATGNSSL RSCCSLPNLL VWLLNLSLLV LAAAALGPVF LLRPRPTPFG WALVSVHATT LLSALAALHA QLTHLCLAAH AALALAALSG HALASLAFFL
101: RHDHSLRLLG SDRDRREQFV LAFLEELLLL AMFVAQAVAL AATCVVSRRW AREYQAAETE KAAAARKRGR KMARVQAESA AAAEAGVKAV DEKVMRSSSG
201: KKVHWAINDG FEEC

Best Arabidopsis Sequence Match ( AT3G42725.1 )
(BLAST)

001: MASFHRKLCL FQNILVSCLN FTLLLLSLCS FVPIILLRNP PTSLGLAFLA VSLVSLISSF GSASSHQSRS CFIARITLHV SSLTGQFIAV LMLFSREKQS
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG

Arabidopsis Description

Putative membrane lipoprotein [Source:UniProtKB/TrEMBL;Acc:Q949S3]
SUBAcon: [extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.