CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16940
KRH66122
KRH72565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G42725.1	KRH16940	AT5G24290.1	21798944
AT3G42725.1	KRH66122	AT5G24290.1	21798944
AT3G42725.1	KRH72565	AT5G24290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02609	Soybean	extracellular, golgi, plasma membrane	84.82	85.78
Solyc07g041770.1.1	Tomato	nucleus	28.79	62.02
PGSC0003DMT400033837	Potato	plasma membrane	28.57	61.54
VIT_11s0016g01160.t01	Wine grape	extracellular, golgi, plasma membrane	62.95	53.92
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	21.65	48.02
AT3G42725.1	Thale cress	extracellular, plasma membrane	20.76	46.04
GSMUA_Achr6P11570_001	Banana	endoplasmic reticulum, plasma membrane	21.43	45.5
TraesCS4B01G293500.1	Wheat	plasma membrane, vacuole	18.08	39.71
EER95403	Sorghum	plastid	17.63	36.92
Zm00001d027883_P001	Maize	endoplasmic reticulum, plasma membrane	17.63	36.92
TraesCS4D01G292100.1	Wheat	plastid	16.29	36.68
HORVU4Hr1G076460.1	Barley	extracellular, mitochondrion, plasma membrane	7.81	32.71

Protein Annotations

Gene3D:3.40.630.30	MapMan:35.2	EMBL:ACUP02008171	InterPro:Acyl_CoA_acyltransferase	EnsemblPlantsGene:GLYMA_13G110200	InterPro:GNAT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004596	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0006474	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0031248	InterPro:IPR000182
UniProt:K7LZ12	EnsemblPlants:KRH19316	ProteinID:KRH19316	ProteinID:KRH19316.1	PFAM:PF00583	PFscan:PS51186
PANTHER:PTHR23091	PANTHER:PTHR23091:SF278	SUPFAM:SSF55729	TMHMM:TMhelix	UniParc:UPI000295FCDC	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:22384570..22388890

Molecular Weight (calculated)

50510.7 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.044

Length

448 amino acids

Sequence
(BLAST)

001: VRRACSFTNL LLSCLNFSIF ILSASSFAPT ILLKMPPTSF GMALLMVSGI SLLSSFVGFY SQLTHFCFLT HISLLLASLI GQVLTILALF TKEKASMSLL
101: KSPRDPKEAK VLVRLECGAL MAMCMLQCVV LMLSCAVHSC WVKDYEELEA EKAASARKRS RRIAEVQEES MANATKMAEI KAKELDEKMK SKYGQTIDTD
201: FLTKKKKQVS VQLPSLTSPV STVRFCDLNF GRLQPSDDEL DPHNRFEFGN FVARQALLHE EYWTAAWLRA EEWASRTHKL YVVNHKRNFA DQEFDAIKKR
301: CKEQQDGQSS TCIITVRKQD KNVKRSIISS VVGTLDLNIR YLRLGETFPG EPVDAPRFCK IERTPSSRYG YIANLCVAKS VRRKGIASNM LYFAVESAKS
401: SGVAHVYVHV DRNNKPAQIL YQNLGFEVVN MASPLLLKSQ TYLLCLQM

Best Arabidopsis Sequence Match ( AT2G06025.4 )
(BLAST)

001: MSTISIHRTE TLRITHARSR IFRQRYRRTI PLWKLTINSR SSDTSKKEEL SVQISIPPQV DQSRPEGLRF DRLQPPEPEF GHEDRFEFGK FVAREAMLDE
101: EYWTAAWLRA ESHWEDRSNE RYVDNYKRKF AEQEFNAIKR RCKGMQGQKC SCIVAVKKEE KHIKRSVIKS VVGTLDLSIR YFLQGETFPG EKVKSQLFCS
201: INQEGSNRYG YIANLCVAKS ARRQGIACNM LRFAVESARL SGVEQVYVHV HKNNSVAQEL YQKTGFKIVE TGKFESLDDD TYLLQYTS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GUT5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.