CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 4
peroxisome 1
nucleus 1
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16940
KRH66122
KRH72565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G42725.1	KRH16940	AT5G24290.1	21798944
AT3G42725.1	KRH66122	AT5G24290.1	21798944
AT3G42725.1	KRH72565	AT5G24290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19316	Soybean	endoplasmic reticulum, vacuole	85.78	84.82
PGSC0003DMT400033837	Potato	plasma membrane	28.22	60.1
Solyc07g041770.1.1	Tomato	nucleus	28.22	60.1
VIT_11s0016g01160.t01	Wine grape	extracellular, golgi, plasma membrane	58.69	49.71
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	21.67	47.52
GSMUA_Achr6P11570_001	Banana	endoplasmic reticulum, plasma membrane	21.9	45.97
AT3G42725.1	Thale cress	extracellular, plasma membrane	20.77	45.54
TraesCS4B01G293500.1	Wheat	plasma membrane, vacuole	18.96	41.18
TraesCS4D01G292100.1	Wheat	plastid	17.38	38.69
EER95403	Sorghum	plastid	18.06	37.38
Zm00001d027883_P001	Maize	endoplasmic reticulum, plasma membrane	18.06	37.38
HORVU4Hr1G076460.1	Barley	extracellular, mitochondrion, plasma membrane	8.13	33.64

Protein Annotations

Gene3D:3.40.630.30	MapMan:35.2	EMBL:ACUP02010312	InterPro:Acyl_CoA_acyltransferase	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G049500
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004596	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006474	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0031248
InterPro:IPR000182	UniProt:K7MK09	EnsemblPlants:KRH02609	ProteinID:KRH02609	ProteinID:KRH02609.1	PFAM:PF00583
PFscan:PS51186	PFscan:PS51257	PANTHER:PTHR23091	PANTHER:PTHR23091:SF278	SUPFAM:SSF55729	TMHMM:TMhelix
UniParc:UPI000296C2AC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:3757063..3763893

Molecular Weight (calculated)

49857.0 Da

IEP (calculated)

9.577

GRAVY (calculated)

-0.016

Length

443 amino acids

Sequence
(BLAST)

001: MASSKSKVRR ACSFTNLLLS CLNFSLFILS ASSFAPTILL KMPPTSFGMA LLMVSGISLL SSFVGFYSPL THFCYLTHIS LLLASLIGQV LTILALFTKE
101: KASMSLLKSP RDPKEAKLLV RLECGALMAM FMLQCVVLML GCAVHSFWVK DYEELEAEKA ASARKRSRRI AEVQEESMAN ASKMAEIKAK ELDEKMKSKT
201: IDTDFLNTKK KQVSFQLSSL ITPPVSTVRF CDLNFGRLQP SDEELGPHKR FEFGNFVARE ALLEEEYWSA ACLRAEEWAN RTDKLYVVDR QRNFAEQEFN
301: AIKKRCKELQ DGHSSTCIIT VRKPQKNVKL PIIESVVGTL DLNIIYLRRG ETFPGIDRTA SSRYGYIANL CVAKSLYRKG VASKMLYFAV ESAKSTGVSR
401: VYAHVDRNNK PAQILYQNLG FEIIDTANPL LLKNQTSLLY LQM

Best Arabidopsis Sequence Match ( AT2G06025.4 )
(BLAST)

001: MSTISIHRTE TLRITHARSR IFRQRYRRTI PLWKLTINSR SSDTSKKEEL SVQISIPPQV DQSRPEGLRF DRLQPPEPEF GHEDRFEFGK FVAREAMLDE
101: EYWTAAWLRA ESHWEDRSNE RYVDNYKRKF AEQEFNAIKR RCKGMQGQKC SCIVAVKKEE KHIKRSVIKS VVGTLDLSIR YFLQGETFPG EKVKSQLFCS
201: INQEGSNRYG YIANLCVAKS ARRQGIACNM LRFAVESARL SGVEQVYVHV HKNNSVAQEL YQKTGFKIVE TGKFESLDDD TYLLQYTS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GUT5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.