Factsheet for VIT_11s0016g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

plastid 2
extracellular 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0245g00010.t01
VIT_00s0245g00030.t01
VIT_00s0267g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G42725.1	VIT_00s0245g00010.t01	AT5G24290.1	21798944
AT3G42725.1	VIT_00s0245g00030.t01	AT5G24290.1	21798944
AT3G42725.1	VIT_00s0267g00030.t01	AT5G24290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041770.1.1	Tomato	nucleus	27.15	68.27
PGSC0003DMT400033837	Potato	plasma membrane	26.96	67.79
KRH19316	Soybean	endoplasmic reticulum, vacuole	53.92	62.95
KRH02609	Soybean	extracellular, golgi, plasma membrane	49.71	58.69
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	18.74	48.51
GSMUA_Achr6P11570_001	Banana	endoplasmic reticulum, plasma membrane	18.74	46.45
AT3G42725.1	Thale cress	extracellular, plasma membrane	17.78	46.04
TraesCS4B01G293500.1	Wheat	plasma membrane, vacuole	15.3	39.22
EER95403	Sorghum	plastid	15.3	37.38
Zm00001d027883_P001	Maize	endoplasmic reticulum, plasma membrane	14.53	35.51
TraesCS4D01G292100.1	Wheat	plastid	13.19	34.67
HORVU4Hr1G076460.1	Barley	extracellular, mitochondrion, plasma membrane	6.88	33.64

Protein Annotations

EntrezGene:100254310	wikigene:100254310	EntrezGene:100256155	wikigene:100256155	Gene3D:3.40.630.30	MapMan:35.2
InterPro:Acyl_CoA_acyltransferase	ProteinID:CBI27813	ProteinID:CBI27813.3	ncoils:Coil	UniProt:D7TCF5	EMBL:FN595756
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004596	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006474	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0031248
InterPro:IPR000182	EntrezGene:LOC100254310	wikigene:LOC100254310	EntrezGene:LOC100256155	wikigene:LOC100256155	PFAM:PF00583
PFscan:PS51186	PANTHER:PTHR23091	PANTHER:PTHR23091:SF278	SUPFAM:SSF55729	TMHMM:TMhelix	UniParc:UPI0001BE33F4
ArrayExpress:VIT_11s0016g01160	EnsemblPlantsGene:VIT_11s0016g01160	EnsemblPlants:VIT_11s0016g01160.t01	RefSeq:XP_002278105	RefSeq:XP_002278105.1	RefSeq:XP_002278959
RefSeq:XP_002278959.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:928669..934396

Molecular Weight (calculated)

59260.1 Da

IEP (calculated)

9.458

GRAVY (calculated)

-0.130

Length

523 amino acids

Sequence
(BLAST)

001: MVPRHGIVLP LMGMCTSRRV IKSNIVLLCE SPHNLAVVAS NGQISTHLNS KHSISFRAVQ HQFQKFPIQM GSSKFRTPCS FLNLLLSCLN FILFILSSAS
101: LAPTILLRMP PTSLGWAFLM ISCISLFSSF VGFYSQLTHF CFITHVSLLL SSSIGQLLGI LALFTRENSS LSMLKSPRDM KEAKLLVRLE CGILMAMFVM
201: QVGVLILTCI IHSCWVREYE GLEAEREAAA RKRSRRIARV QEESMANAAK IAEVKAKEFD EKMKNKYGQA MDSNSSTRKK EEFSIEIQAP SVPQFRTERP
301: SNLQFDQLQP SDEEFNEGSR AEFGPFMARA AVLDEEYWTA AWLRAESHWE GRPNERYAEN YKRKFAEQEF NALKRRCRGQ NDQKYTCIVA VKKEERGVKQ
401: TVLKSVVGTL DLSIRYLLNG DTFPGEQVKA PLFCSINRTR SSKYGYVANL CVAKSVRRQG IASNMLHFAV ESAKSIGVEQ VFVHVHRNNG PAQELYQKMG
501: FEMVEVASSQ LLQEQTYLLC FRT

Best Arabidopsis Sequence Match ( AT2G06025.4 )
(BLAST)

001: MSTISIHRTE TLRITHARSR IFRQRYRRTI PLWKLTINSR SSDTSKKEEL SVQISIPPQV DQSRPEGLRF DRLQPPEPEF GHEDRFEFGK FVAREAMLDE
101: EYWTAAWLRA ESHWEDRSNE RYVDNYKRKF AEQEFNAIKR RCKGMQGQKC SCIVAVKKEE KHIKRSVIKS VVGTLDLSIR YFLQGETFPG EKVKSQLFCS
201: INQEGSNRYG YIANLCVAKS ARRQGIACNM LRFAVESARL SGVEQVYVHV HKNNSVAQEL YQKTGFKIVE TGKFESLDDD TYLLQYTS

Arabidopsis Description

Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GUT5]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.