Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- vacuole 4
- extracellular 3
- endoplasmic reticulum 3
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G292100.1 | Wheat | plastid | 78.92 | 80.9 |
| HORVU4Hr1G076460.1 | Barley | extracellular, mitochondrion, plasma membrane | 33.82 | 64.49 |
| EER95403 | Sorghum | plastid | 66.18 | 63.08 |
| Zm00001d027883_P001 | Maize | endoplasmic reticulum, plasma membrane | 63.73 | 60.75 |
| GSMUA_Achr6P11570_001 | Banana | endoplasmic reticulum, plasma membrane | 49.02 | 47.39 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 46.57 | 47.03 |
| PGSC0003DMT400033837 | Potato | plasma membrane | 36.76 | 36.06 |
| Solyc07g041770.1.1 | Tomato | nucleus | 36.76 | 36.06 |
| AT3G42725.1 | Thale cress | extracellular, plasma membrane | 31.37 | 31.68 |
| KRH02609 | Soybean | extracellular, golgi, plasma membrane | 41.18 | 18.96 |
| KRH19316 | Soybean | endoplasmic reticulum, vacuole | 39.71 | 18.08 |
| VIT_11s0016g01160.t01 | Wine grape | extracellular, golgi, plasma membrane | 39.22 | 15.3 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G293500.1 | EnsemblPlantsGene:TraesCS4B01G293500 | PANTHER:PTHR39113 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:579102435..579103049
Molecular Weight (calculated)
21742.6 Da
IEP (calculated)
10.002
GRAVY (calculated)
0.347
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSLRSS CSFPNLLLWL LNLSLLALAA AALAPALLLR PRPTPFGWAL LSVHAATLLS ALASLHAHLA HRRLCCHAHA ALAVAALCGH ALASYALLLR
101: RDRSLALLAS ARDRREQVAL VLLEAALLLA MFLVQAVALA AACAVDRRWA REHEAAEAEK AAAARKRERK MTRVRAEEAQ AGVGAVDEEK ATSGKVVLRG
201: NDEE
101: RDRSLALLAS ARDRREQVAL VLLEAALLLA MFLVQAVALA AACAVDRRWA REHEAAEAEK AAAARKRERK MTRVRAEEAQ AGVGAVDEEK ATSGKVVLRG
201: NDEE
001: MASFHRKLCL FQNILVSCLN FTLLLLSLCS FVPIILLRNP PTSLGLAFLA VSLVSLISSF GSASSHQSRS CFIARITLHV SSLTGQFIAV LMLFSREKQS
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
Arabidopsis Description
Putative membrane lipoprotein [Source:UniProtKB/TrEMBL;Acc:Q949S3]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.