Factsheet for PGSC0003DMT400033837

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001535
PGSC0003DMT400071835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G42725.1	PGSC0003DMT400001535	AT5G24290.1	21798944
AT3G42725.1	PGSC0003DMT400071835	AT5G24290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041770.1.1	Tomato	nucleus	96.15	96.15
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	47.6	49.01
GSMUA_Achr6P11570_001	Banana	endoplasmic reticulum, plasma membrane	48.08	47.39
AT3G42725.1	Thale cress	extracellular, plasma membrane	42.31	43.56
TraesCS4B01G293500.1	Wheat	plasma membrane, vacuole	36.06	36.76
EER95403	Sorghum	plastid	37.5	36.45
Zm00001d027883_P001	Maize	endoplasmic reticulum, plasma membrane	35.58	34.58
TraesCS4D01G292100.1	Wheat	plastid	32.69	34.17
HORVU4Hr1G076460.1	Barley	extracellular, mitochondrion, plasma membrane	16.83	32.71
KRH19316	Soybean	endoplasmic reticulum, vacuole	61.54	28.57
KRH02609	Soybean	extracellular, golgi, plasma membrane	60.1	28.22
VIT_11s0016g01160.t01	Wine grape	extracellular, golgi, plasma membrane	67.79	26.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400033837	EnsemblPlantsGene:PGSC0003DMG400013001	EntrezGene:102604684	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR39113	PGSC:PGSC0003DMG400013001	RefSeq:XP_006342373.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002951209
UniProt:M1AZS5	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013001]

Coordinates

chr7:-:38653585..38654458

Molecular Weight (calculated)

23581.2 Da

IEP (calculated)

8.417

GRAVY (calculated)

0.285

Length

208 amino acids

Sequence
(BLAST)

001: MTSSKLRHSC SFPILLLSFL NFILFILSAA SIGPIVFLKT PPTSLGWSFL IVSSISLLSC FIGFYSQLTH CCFITHLSLL MASCIGQLLG ILALFTKEKS
101: SLLMLKSPRD PREAKVLVRL ECGVLMSMFV MQIGVLVVTC AVQSCWVRDY ESVEAEREAW SRKRNQRIAK VQQECMENAN KICEMKDKEF DDKIKNNYGQ
201: WVKNDFEG

Best Arabidopsis Sequence Match ( AT3G42725.1 )
(BLAST)

001: MASFHRKLCL FQNILVSCLN FTLLLLSLCS FVPIILLRNP PTSLGLAFLA VSLVSLISSF GSASSHQSRS CFIARITLHV SSLTGQFIAV LMLFSREKQS
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG

Arabidopsis Description

Putative membrane lipoprotein [Source:UniProtKB/TrEMBL;Acc:Q949S3]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.