Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- endoplasmic reticulum 3
- nucleus 1
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P20170_001 | |
| GSMUA_Achr6P36880_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G42725.1 | GSMUA_Achr1P20170_001 | AT5G24290.1 | 21798944 |
| AT3G42725.1 | GSMUA_Achr6P36880_001 | AT5G24290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 78.67 | 82.18 |
| TraesCS4B01G293500.1 | Wheat | plasma membrane, vacuole | 47.39 | 49.02 |
| PGSC0003DMT400033837 | Potato | plasma membrane | 47.39 | 48.08 |
| EER95403 | Sorghum | plastid | 48.34 | 47.66 |
| HORVU4Hr1G076460.1 | Barley | extracellular, mitochondrion, plasma membrane | 24.17 | 47.66 |
| Zm00001d027883_P001 | Maize | endoplasmic reticulum, plasma membrane | 48.34 | 47.66 |
| Solyc07g041770.1.1 | Tomato | nucleus | 45.5 | 46.15 |
| TraesCS4D01G292100.1 | Wheat | plastid | 41.23 | 43.72 |
| AT3G42725.1 | Thale cress | extracellular, plasma membrane | 36.02 | 37.62 |
| KRH02609 | Soybean | extracellular, golgi, plasma membrane | 45.97 | 21.9 |
| KRH19316 | Soybean | endoplasmic reticulum, vacuole | 45.5 | 21.43 |
| VIT_11s0016g01160.t01 | Wine grape | extracellular, golgi, plasma membrane | 46.45 | 18.74 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P11570_001 | EnsemblPlants:GSMUA_Achr6T11570_001 | EnsemblPlantsGene:GSMUA_Achr6G11570_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR39113 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002961130 | UniProt:M0T655 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G11570_001]
Coordinates
chr6:-:7659128..7659763
Molecular Weight (calculated)
23132.1 Da
IEP (calculated)
10.741
GRAVY (calculated)
0.174
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKMKRPSS SSSLPSLLLS SLNLFLLVLA SASFSPVFLL RTSPTSSGWA LVAVSSATVV SSLLGFFSQL THLCFLAHVS FVLASSVGQA LGFLALFLRP
101: DPSLQLLGSA RSRREQRALA KVEEALLLGM FLVQSLELVA ACAVQRWWAR QFEEVEAERE ASVRKRSRRM ARVQEEAIAN AAAMAEAKAR ELEEKMRANN
201: KGQWVKNDFE G
101: DPSLQLLGSA RSRREQRALA KVEEALLLGM FLVQSLELVA ACAVQRWWAR QFEEVEAERE ASVRKRSRRM ARVQEEAIAN AAAMAEAKAR ELEEKMRANN
201: KGQWVKNDFE G
001: MASFHRKLCL FQNILVSCLN FTLLLLSLCS FVPIILLRNP PTSLGLAFLA VSLVSLISSF GSASSHQSRS CFIARITLHV SSLTGQFIAV LMLFSREKQS
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
Arabidopsis Description
Putative membrane lipoprotein [Source:UniProtKB/TrEMBL;Acc:Q949S3]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.