Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033837 | Potato | plasma membrane | 43.56 | 42.31 |
| Solyc07g041770.1.1 | Tomato | nucleus | 42.57 | 41.35 |
| GSMUA_Achr6P11570_001 | Banana | endoplasmic reticulum, plasma membrane | 37.62 | 36.02 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 34.16 | 34.16 |
| TraesCS4D01G292100.1 | Wheat | plastid | 31.19 | 31.66 |
| TraesCS4B01G293500.1 | Wheat | plasma membrane, vacuole | 31.68 | 31.37 |
| EER95403 | Sorghum | plastid | 28.22 | 26.64 |
| Zm00001d027883_P001 | Maize | endoplasmic reticulum, plasma membrane | 28.22 | 26.64 |
| HORVU4Hr1G076460.1 | Barley | extracellular, mitochondrion, plasma membrane | 12.38 | 23.36 |
| KRH02609 | Soybean | extracellular, golgi, plasma membrane | 45.54 | 20.77 |
| KRH19316 | Soybean | endoplasmic reticulum, vacuole | 46.04 | 20.76 |
| VIT_11s0016g01160.t01 | Wine grape | extracellular, golgi, plasma membrane | 46.04 | 17.78 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823305 | ProteinID:AEE77748.1 | ArrayExpress:AT3G42725 | EnsemblPlantsGene:AT3G42725 | RefSeq:AT3G42725 |
| TAIR:AT3G42725 | RefSeq:AT3G42725-TAIR-G | EnsemblPlants:AT3G42725.1 | TAIR:AT3G42725.1 | EMBL:AY050920 | EMBL:AY113968 |
| Unigene:At.26545 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_566864.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PFscan:PS51257 |
| PANTHER:PTHR39113 | UniProt:Q949S3 | TMHMM:TMhelix | UniParc:UPI00000A0897 | SEG:seg | : |
Description
Putative membrane lipoprotein [Source:UniProtKB/TrEMBL;Acc:Q949S3]
Coordinates
chr3:-:14842849..14843718
Molecular Weight (calculated)
22705.1 Da
IEP (calculated)
8.415
GRAVY (calculated)
0.392
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFHRKLCL FQNILVSCLN FTLLLLSLCS FVPIILLRNP PTSLGLAFLA VSLVSLISSF GSASSHQSRS CFIARITLHV SSLTGQFIAV LMLFSREKQS
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
101: LSLLISTRDP REAKALVRVE CGVFVAMIPL QIMVLVLACL LHCYWVREFE GLDVESEDSF RRKCNRRVST AEDGTSSDLK KMELDEKMNV KHVQWVKTDF
201: EG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.