CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
plastid 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	EER96942	AT4G26455.1	21798944
AT3G02690.1	EES14314	AT4G26455.1	21798944
AT3G02690.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	71.57	75.96
TraesCS1B01G181600.1	Wheat	plasma membrane	71.57	75.96
TraesCS1A01G164700.1	Wheat	plastid	71.08	75.06
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	60.72	73.9
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	49.64	73.84
Bra028920.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	17.83	71.84
Zm00001d032604_P001	Maize	plasma membrane	79.04	70.69
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	71.08	68.76
Bra036508.1-P	Field mustard	extracellular	15.66	59.63
KRG98057	Soybean	plastid	57.59	58.01
KRH30722	Soybean	plastid	57.59	58.01
CDY31931	Canola	extracellular	16.14	57.76
CDY53736	Canola	plastid	57.35	57.21
Bra021420.1-P	Field mustard	plastid	57.11	56.83
Solyc02g036470.2.1	Tomato	plastid	57.35	56.67
AT3G02690.1	Thale cress	plastid	56.87	56.59
PGSC0003DMT400055258	Potato	plastid	57.11	56.03
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	8.43	36.08
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	3.13	26.0

Protein Annotations

MapMan:24.2.1.5	EntrezGene:8067103	UniProt:C5WXC6	EnsemblPlants:EER94017	ProteinID:EER94017	ProteinID:EER94017.1
InterPro:EamA_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	PFAM:PF00892	PANTHER:PTHR22911	PANTHER:PTHR22911:SF60
EnsemblPlantsGene:SORBI_3001G207800	SUPFAM:SSF103481	unigene:Sbi.2064	TMHMM:TMhelix	UniParc:UPI0001A8286D	RefSeq:XP_002467019.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:19036746..19040290

Molecular Weight (calculated)

43172.8 Da

IEP (calculated)

7.497

GRAVY (calculated)

0.563

Length

415 amino acids

Sequence
(BLAST)

001: MLAAARPASA HLLLLVPLPS PPRLSRPAPT RRLYALAPAR RPAAVRARRE SSPPAAPAPA DSLDCVGTGS DVECLIDAGA KDAASPLLPA RSPAAPGASK
101: DDGKKSEGDA AAVSASLLWE WASLVSPFFF WGTAMVAMKG VIPRTGPFFV AALRLLPAGA LLVAFAAARG RKQPAGWEAW LAIAAFGLID AACFQGFLAE
201: GLQKTSAGLG SVIIDSQPLT VAILASLLFG ESIGAVGVGG LVLGVVGLLL LEVPALSIEG NDTTIWGSGE WLMFLSAQSM AVGTIMVRWV SKYSDPIMAT
301: GWHMIIGGLP LLVISVLNHD PALSGHIQDL TLSDILALGY TSIFGSAVSY GVYFYNATRG SLTTLSSLTF LTPMFASVFG YLYLGETFSP VQLGGALLTL
401: VAIYMVNYKS IIGEK

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.