CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	KRH11076	AT4G19030.1	21798944
AT3G02690.1	KRH21197	AT4G19030.1	21798944
AT3G02690.1	KRH42923	AT4G19030.1	21798944
AT3G02690.1	KRH42926	AT4G19030.1	21798944
AT3G02690.1	KRH45251	AT4G19030.1	21798944
AT3G02690.1	KRH59035	AT4G19030.1	21798944
AT3G02690.1	KRH59036	AT4G19030.1	21798944
AT3G02690.1	KRH56393	AT4G26455.1	21798944
AT3G02690.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98057	Soybean	plastid	91.02	91.02
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	56.8	83.87
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	58.25	70.38
PGSC0003DMT400055258	Potato	plastid	65.05	63.36
Solyc02g036470.2.1	Tomato	plastid	64.08	62.86
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	56.55	59.59
TraesCS1B01G181600.1	Wheat	plasma membrane	56.07	59.08
AT3G02690.1	Thale cress	plastid	59.47	58.75
TraesCS1A01G164700.1	Wheat	plastid	55.1	57.76
EER94017	Sorghum	plastid	58.01	57.59
Bra036508.1-P	Field mustard	extracellular	15.05	56.88
CDY31931	Canola	extracellular	15.53	55.17
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	56.07	53.85
Zm00001d032604_P001	Maize	plasma membrane	53.88	47.84
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	3.64	30.0

Protein Annotations

EMBL:ACUP02007061	EnsemblPlants:KRH30722	EnsemblPlantsGene:GLYMA_11G202900	EntrezGene:100807866	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:EamA_dom	PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	ProteinID:KRH30722
ProteinID:KRH30722.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI000233C978
UniProt:I1LM16	MapMan:24.2.1.5	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:28350488..28353817

Molecular Weight (calculated)

43668.9 Da

IEP (calculated)

4.501

GRAVY (calculated)

0.659

Length

412 amino acids

Sequence
(BLAST)

001: MASWWCSSPS ATLTVAAAAA TTATCHSSLI PHTSQFRIQT LTFPLSSFPL STTASSSLRF RLPCSNKTAF ETELPEDGVD CVGTGQDVEC LVNTEEKQSE
101: PTSSSSSSSM LCLAEALWEG AVLVSPFFFW GTAMVAMKEV LPKCGPFFVS AFRLIPAGFL LVAFAASRGR SLPSGFIAWL SITLFALVDA TCFQGFLAEG
201: LQRTSAGLGS IIIDSQPLTV AVLAALLFGE SIGVVGAAGL VLGVIGLVLL ELPALSFDES NFSLWGSGEW WMLLAAQSMA VGTVMVRWVS KYSDPVMATG
301: WHMVIGGLPL VLFAVLNNDP ALSLSLKEYS STDILALLYT SVFGSAVSYG VFFYSATKGS LTKLSSLTFL TPMFASIFGF LYLGETFSPV QLVGALVTVA
401: GIYMVNLRST SE

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.