Factsheet for TraesCS1B01G181600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT3G02690.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	98.72	98.72
TraesCS1A01G164700.1	Wheat	plastid	93.09	92.62
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	85.17	77.62
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	53.45	74.91
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	63.17	72.43
EER94017	Sorghum	plastid	75.96	71.57
Bra028920.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	18.16	68.93
Zm00001d032604_P001	Maize	plasma membrane	72.38	60.99
Bra036508.1-P	Field mustard	extracellular	16.37	58.72
Solyc02g036470.2.1	Tomato	plastid	61.38	57.14
CDY31931	Canola	extracellular	16.88	56.9
PGSC0003DMT400055258	Potato	plastid	61.38	56.74
KRG98057	Soybean	plastid	59.34	56.31
KRH30722	Soybean	plastid	59.08	56.07
CDY53736	Canola	plastid	59.59	56.01
Bra021420.1-P	Field mustard	plastid	59.08	55.4
AT3G02690.1	Thale cress	plastid	59.08	55.4
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	8.95	36.08
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	2.81	22.0

Protein Annotations

EnsemblPlants:TraesCS1B01G181600.1	EnsemblPlantsGene:TraesCS1B01G181600	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:EamA_dom	PANTHER:PTHR22911
PANTHER:PTHR22911:SF60	PFAM:PF00892	SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	MapMan:24.2.1.5

Description

No Description!

Coordinates

chr1B:-:328642492..328646170

Molecular Weight (calculated)

41124.2 Da

IEP (calculated)

6.023

GRAVY (calculated)

0.537

Length

391 amino acids

Sequence
(BLAST)

001: MSTAAPFRLL LPLHPPLTPR RHSAPVLPSV PRRGTVPSPR LRLRLRIAAG GGDAPPPAAD ELDCVGTGSD VECVVDGDPG AEEGVAPALA GREWWEWVSL
101: VSPFFFWGTA MVAMKGVIPK TGPFFVAALR LLPAGALVVS FAAARGRKQP SGWAAWGAIA AFGLIDAACF QGFLTEGLQK TSAGLGSVII DSQPLTVAIL
201: AALFFGESIG AIGAGGLVLG VVGLLLLEVP ALSVEGNNTS VWGSGEWWMF LSAQSMAVGT IMVRWVSKYS DPIMATGWHM VLGGIPLLVI SVLNHDPALN
301: GHIQELTWSD IAALGYTSIF GSAVSYGVYF YNATRGSLTT LSSLTFLTPM FASIFGFLYL GETFAPEQIG GALLTLVAIY MVNYKSIIGE K

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.