Factsheet for Bra021420.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G02690.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G02690.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53736	Canola	plastid	94.96	95.19
Bra028920.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	22.3	90.29
AT3G02690.1	Thale cress	plastid	80.82	80.82
Bra036508.1-P	Field mustard	extracellular	19.66	75.23
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	55.64	68.04
TraesCS1B01G181600.1	Wheat	plasma membrane	55.4	59.08
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	55.4	59.08
TraesCS1A01G164700.1	Wheat	plastid	55.4	58.78
EER94017	Sorghum	plastid	56.83	57.11
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	55.88	54.31
Zm00001d032604_P001	Maize	plasma membrane	55.4	49.78
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	9.11	39.18

Protein Annotations

EnsemblPlants:Bra021420.1	EnsemblPlants:Bra021420.1-P	EnsemblPlantsGene:Bra021420	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:EamA_dom	PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	SEG:seg	SUPFAM:SSF103481
TMHMM:TMhelix	UniParc:UPI0002544AEE	UniProt:M4DY24	MapMan:24.2.1.5	:	:

Description

AT3G02690 (E=2e-175) | integral membrane family protein

Coordinates

chrA01:+:25269181..25270946

Molecular Weight (calculated)

44885.1 Da

IEP (calculated)

5.005

GRAVY (calculated)

0.412

Length

417 amino acids

Sequence
(BLAST)

001: MEWPWSAIAS SPSPPYSSRC FFTSPNSCLS LTRRANLNSS IKPLRHIGFD SKHHTLITKR RVHGDSIVRR STTSSKNAEE IESSVECVGM GSDVECVYTG
101: GEEDEEEENR SSGILSGGDG SFLEWAVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYRGRPLPKG FDAWLSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNSFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INNDPVFNGS LQKLSTNDII ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLDE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.