Factsheet for Bra028920.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 3
golgi 2
nucleus 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012567.1-P
Bra013361.1-P
Bra026434.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G02690.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G02690.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036508.1-P	Field mustard	extracellular	47.57	44.95
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	29.13	30.93
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	77.67	23.46
AT3G02690.1	Thale cress	plastid	90.29	22.3
Bra021420.1-P	Field mustard	plastid	90.29	22.3
TraesCS1B01G181600.1	Wheat	plasma membrane	68.93	18.16
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	68.93	18.16
TraesCS1A01G164700.1	Wheat	plastid	68.93	18.07
EER94017	Sorghum	plastid	71.84	17.83
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	68.93	16.55
Zm00001d032604_P001	Maize	plasma membrane	70.87	15.73

Protein Annotations

EnsemblPlants:Bra028920.1	EnsemblPlants:Bra028920.1-P	EnsemblPlantsGene:Bra028920	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:EamA_dom	PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	SUPFAM:SSF103481	TMHMM:TMhelix
UniParc:UPI00025435BD	UniProt:M4EJF4	MapMan:35.1	:	:	:

Description

AT3G02690 (E=6e-023) | integral membrane family protein

Coordinates

chrA02:+:1386509..1387199

Molecular Weight (calculated)

11253.8 Da

IEP (calculated)

4.483

GRAVY (calculated)

0.594

Length

103 amino acids

Sequence
(BLAST)

001: MLLAAQSMAI GTVMVRWVSK YSDPDMATGW HMVIGGLPLL AISVINHDPE ACLNSAHSTF LTPMFASIFR YLYLDETFSS LQLLGAAVTL VAIYLVNFPE
101: GND

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.