Factsheet for GSMUA_Achr1P00030_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 4
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT3G02690.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT3G02690.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT3G02690.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	65.98	80.65
Bra028920.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	23.46	77.67
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	72.73	63.43
TraesCS1B01G181600.1	Wheat	plasma membrane	72.43	63.17
TraesCS1A01G164700.1	Wheat	plastid	70.67	61.32
EER94017	Sorghum	plastid	73.9	60.72
KRG98057	Soybean	plastid	71.26	58.98
Solyc02g036470.2.1	Tomato	plastid	72.43	58.81
KRH30722	Soybean	plastid	70.38	58.25
PGSC0003DMT400055258	Potato	plastid	71.85	57.92
Bra036508.1-P	Field mustard	extracellular	18.48	57.8
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	71.26	56.64
CDY31931	Canola	extracellular	19.06	56.03
CDY53736	Canola	plastid	68.33	56.01
Bra021420.1-P	Field mustard	plastid	68.04	55.64
AT3G02690.1	Thale cress	plastid	67.16	54.92
Zm00001d032604_P001	Maize	plasma membrane	68.92	50.65
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	11.14	39.18
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	3.81	26.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P00030_001	EnsemblPlants:GSMUA_Achr1T00030_001	EnsemblPlantsGene:GSMUA_Achr1G00030_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:EamA_dom
PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix
UniParc:UPI000294B2A9	UniProt:M0RVR1	MapMan:24.2.1.5	:	:	:

Description

Uncharacterized transporter sll0355 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00030_001]

Coordinates

chr1:-:20901..26316

Molecular Weight (calculated)

35830.2 Da

IEP (calculated)

4.786

GRAVY (calculated)

0.803

Length

341 amino acids

Sequence
(BLAST)

001: MPPRPDVDYP AAVDCVGTGA DVECYAIARG GDEGDPVAGL LGKALDWALL VSPFFFWGTA MVAMKGVIPK TGPFFVSAVR LIPAGAVLIG FAAARGRKLP
101: AGSLAWLSIF LFGVVDAACF QGFLAEGLQK TAAGLGSVII DSQPLTVAIL AAILFGESIG AIGVAGLVLG VIGLLLLEVP ALSFEGSNST IWGSGEWWML
201: LAAQSMAIGT VMVRWVSKYS DPVMATGWHM VIGGLPLLFI SVLNHDPAMN GRLVDLTSSD ILALCYTSLF GCAISYGVFF YNATRGSLTR LSSLTFLTPM
301: FASIFGYLYL GETFSPLQLV GALVTILAIY MVNYRGISDK A

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.