Factsheet for PGSC0003DMT400055258

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G02690.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT3G02690.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT3G02690.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036470.2.1	Tomato	plastid	93.62	94.29
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	55.32	83.87
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	57.92	71.85
KRG98057	Soybean	plastid	63.83	65.53
KRH30722	Soybean	plastid	63.36	65.05
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	57.21	61.89
AT3G02690.1	Thale cress	plastid	60.52	61.39
TraesCS1B01G181600.1	Wheat	plasma membrane	56.74	61.38
TraesCS1A01G164700.1	Wheat	plastid	56.5	60.81
Bra036508.1-P	Field mustard	extracellular	15.6	60.55
CDY31931	Canola	extracellular	16.08	58.62
EER94017	Sorghum	plastid	56.03	57.11
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	56.26	55.48
Zm00001d032604_P001	Maize	plasma membrane	54.14	49.35
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	3.31	28.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055258	EnsemblPlantsGene:PGSC0003DMG400021455	EntrezGene:102600367	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:EamA_dom
PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	PGSC:PGSC0003DMG400021455	RefSeq:XP_006350457.1	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0002964A70	UniProt:M1BXN9	MapMan:24.2.1.5	:

Description

Integral membrane family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021455]

Coordinates

chr2:-:17928441..17936399

Molecular Weight (calculated)

45948.4 Da

IEP (calculated)

5.646

GRAVY (calculated)

0.356

Length

423 amino acids

Sequence
(BLAST)

001: MAWSPFSSSS TPLCSSLTTN PTNSLRKTSS LFHHHSLNHR RDEFLQYPNT ISFKNLNFRT KKFTSCSKTK ATESGVEEKP SPSSSELDCV GTGLDVECVV
101: NPSEEFPKDS NLRFQDEGVS SMELLQTILE WGLLISPFFF WGTAMVAMKE VLPKTGPFFV SSFRLIPAGL MLVGFAASRG RNYPSGFNAW LSITLFAIVD
201: ATCFQGFLAE GLQRTSAGLG SVIIDSQPLT VAVLAALLFG ESIGSVGAAG LVLGVIGLLL LEVPALSFDN SNFSLWGSGE WWMFLAAQSM AVGTVMVRWV
301: SKYSDPVMAT GWHMVIGGLP LVAISILNHE PVISGSLMEL TSNDLLALLY TSIFGSAISY GVYFYNATRG SLTKLSSLTF LTPMFASIFG FLYLDETFTS
401: VQLIGAFVTV AAIYMVNYKS DTK

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.