Factsheet for Zm00001d032604_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d020879_P001
Zm00001d025667_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT3G02690.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT3G02690.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT3G02690.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94017	Sorghum	plastid	70.69	79.04
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	60.99	72.38
TraesCS1B01G181600.1	Wheat	plasma membrane	60.99	72.38
TraesCS1A01G164700.1	Wheat	plastid	60.99	72.01
Bra028920.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	15.73	70.87
VIT_04s0069g01000.t01	Wine grape	golgi, plasma membrane, plastid	41.81	69.53
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	50.65	68.92
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	61.85	66.9
Bra036508.1-P	Field mustard	extracellular	13.79	58.72
CDY31931	Canola	extracellular	14.22	56.9
CDY53736	Canola	plastid	50.22	56.01
Bra021420.1-P	Field mustard	plastid	49.78	55.4
Solyc02g036470.2.1	Tomato	plastid	49.57	54.76
AT3G02690.1	Thale cress	plastid	48.92	54.44
KRG98057	Soybean	plastid	48.28	54.37
PGSC0003DMT400055258	Potato	plastid	49.35	54.14
KRH30722	Soybean	plastid	47.84	53.88
Bra031800.1-P	Field mustard	cytosol, extracellular, plastid	7.54	36.08
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	2.37	22.0

Protein Annotations

EnsemblPlants:Zm00001d032604_P001	EnsemblPlants:Zm00001d032604_T001	EnsemblPlantsGene:Zm00001d032604	EntrezGene:103643415	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021
InterPro:EamA_dom	PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	ProteinID:ONM05530.1	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0008445A7A	UniProt:A0A1D6KS78	MapMan:35.1	:

Description

WAT1-related protein chloroplastic

Coordinates

chr1:-:231816478..231819645

Molecular Weight (calculated)

48879.2 Da

IEP (calculated)

6.676

GRAVY (calculated)

0.401

Length

464 amino acids

Sequence
(BLAST)

001: MAAAARPASA HLLLLAPLPS PPRLSHLIHT RRLYALAPAR RPAAARARRE SSPPSAPSPP APADSLDCVG TGSDVECFVD AGAEDAAPLL PALSAGASKD
101: DGKSEGDAAV SASPTGRELL EWASLVSPFF FWGTAMVAMK GVIPRTGPFF VAAIRLLPAG ALLVAFAAAR GRKQPSGWEA WLAIAAFGLI DAACFQVHNH
201: GHVEWLSRGG TAEDIGWARE RKAKSKLRPC SLSHQARQVF ALPSWPGELV ALTELDSPFQ VIIDSQPLTV AILASLLFGE SIGAIGVGGL VLGVVGLLLL
301: EVPALSVEGN DTTIWGSGES LMFLSAQSMA VGTIMVRWVS KYSDPIMATG WHMIIGGLPL LVISVLNHDP ALSGHIQDLT WSDILALGYT SIFGSAVSYG
401: VYFYNATRGS LTTLSSLTFL TPMFASVFGY LYLGETFSTV QIGGALLTLV AIYMVNYKSI IGEK

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.