CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	CDX78905	AT4G19030.1	21798944
AT3G02690.1	CDX98596	AT4G19030.1	21798944
AT3G02690.1	CDX99411	AT4G19030.1	21798944
AT3G02690.1	CDY01565	AT4G19030.1	21798944
AT3G02690.1	CDX89333	AT4G26455.1	21798944
AT3G02690.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021420.1-P	Field mustard	plastid	95.19	94.96
AT3G02690.1	Thale cress	plastid	81.01	80.82
CDY31931	Canola	extracellular	20.43	73.28
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	56.01	68.33
TraesCS1B01G181600.1	Wheat	plasma membrane	56.01	59.59
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	56.01	59.59
TraesCS1A01G164700.1	Wheat	plastid	56.01	59.29
EER94017	Sorghum	plastid	57.21	57.35
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	55.53	53.85
Zm00001d032604_P001	Maize	plasma membrane	56.01	50.22
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	3.37	28.0

Protein Annotations

EnsemblPlants:CDY53736	EnsemblPlantsGene:GSBRNA2T00011320001	GO:A0A078IV16	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016021	InterPro:EamA_dom
PANTHER:PTHR22911	PANTHER:PTHR22911:SF60	PFAM:PF00892	ProteinID:CDY53736	ProteinID:CDY53736.1	SEG:seg
SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EE7395	UniProt:A0A078IV16	MapMan:24.2.1.5	:

Description

BnaAnng12640DBnaAnng12640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV16]

Coordinates

chrLK033233:+:53..2066

Molecular Weight (calculated)

44732.9 Da

IEP (calculated)

4.785

GRAVY (calculated)

0.409

Length

416 amino acids

Sequence
(BLAST)

001: MEWPWSAIAA SSSPYSSRCF FTSPNSCLSL TRRTSLNSSI KPLRHIGFDS KHHNLITKRR VHGDSIVRRS TTSSKNAEET ESSVECVGMG SDVECVYTGE
101: GEDEEEENRS SGILSGGDGS LLEWAVLISP FFFWGTAMVA MKEVLPITGP FFVAAFRLIP AGLLLVAFAV YRGRPLPKGF DAWLSIALFA LVDATCFQGF
201: LAQGLQRTSA GLGSVIIDSQ PLTVAVLASF LFGESIGIVR AGGLLLGVAG LLLLEVPSVT SDGNSFSLWG SGEWWMLLAA QSMAIGTVMV RWVSKYSDPI
301: MATGWHMVIG GLPLLAISVI NNDPVFNGSL QELSTNDIIA LLYTSIFGSA VSYGVYFYSA TKGSLTKLSS LTFLTPMFAS IFGYLYLDET FSSLQLVGAA
401: VTLVAIYLVN FPEGND

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.