Factsheet for VIT_04s0069g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 2
golgi 3
plasma membrane 4
extracellular 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0003g01830.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02690.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT3G02690.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00030_001	Banana	golgi, plasma membrane, vacuole	80.65	65.98
KRG98057	Soybean	plastid	84.23	57.04
KRH30722	Soybean	plastid	83.87	56.8
Bra036508.1-P	Field mustard	extracellular	21.86	55.96
PGSC0003DMT400055258	Potato	plastid	83.87	55.32
Solyc02g036470.2.1	Tomato	plastid	83.15	55.24
CDY31931	Canola	extracellular	22.58	54.31
TraesCS1D01G161800.1	Wheat	plasma membrane, plastid, vacuole	75.63	53.96
TraesCS1B01G181600.1	Wheat	plasma membrane	74.91	53.45
TraesCS1A01G164700.1	Wheat	plastid	74.91	53.18
AT3G02690.1	Thale cress	plastid	74.19	49.64
EER94017	Sorghum	plastid	73.84	49.64
HORVU1Hr1G043730.13	Barley	mitochondrion, plastid	74.19	48.25
Zm00001d032604_P001	Maize	plasma membrane	69.53	41.81
CDY55106	Canola	extracellular, golgi, mitochondrion, plastid	4.66	26.0

Protein Annotations

EntrezGene:100256401	wikigene:100256401	MapMan:24.2.1.5	EMBL:AM454848	ProteinID:CAN76724	ProteinID:CAN76724.1
ProteinID:CBI24022	ProteinID:CBI24022.3	UniProt:D7T0F0	InterPro:EamA_dom	EMBL:FN595500	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100256401	wikigene:LOC100256401	PFAM:PF00892	PANTHER:PTHR22911
PANTHER:PTHR22911:SF60	SUPFAM:SSF103481	TIGR:TC61656	TMHMM:TMhelix	UniParc:UPI0001BE253C	ArrayExpress:VIT_04s0069g01000
EnsemblPlantsGene:VIT_04s0069g01000	EnsemblPlants:VIT_04s0069g01000.t01	unigene:Vvi.1336	RefSeq:XP_002263956	RefSeq:XP_002263956.1	SEG:seg

Description

No Description!

Coordinates

chr4:-:9420388..9425995

Molecular Weight (calculated)

29768.8 Da

IEP (calculated)

5.710

GRAVY (calculated)

0.862

Length

279 amino acids

Sequence
(BLAST)

001: MVAMKQVLPK AGPFFVSSFR LIPAGLLIIA YAASRGRKQP SGFSAWLSIF LFALVDAACF QGFLAEGLQR TSAGLGSVII DSQPLTVAVL AALLFGESIG
101: FIGAAGLVLG VIGLLLLEVP ALSVDGSNFS LWGSGEWWML LAAQSMAVGT VMIRWVTKYS DPVMATGWHM VIGGLPLVLI SILNHDPALS GSFNELTSSD
201: LLALLYTSIF GSAISYSVFF YYATRGSLTK LSSLTFLTPM FASIFGFLYL GETLSPLQLV GALVTILGIY MVNYRDSME

Best Arabidopsis Sequence Match ( AT3G02690.1 )
(BLAST)

001: MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC
101: VNNGEDEENR SSGILSGGEG TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG INAWFSIALF ALVDATCFQG
201: FLAQGLQRTS AGLGSVIIDS QPLTVAVLAS FLFGESIGIV RAGGLLLGVA GLLLLEVPSV TSDGNNFSLW GSGEWWMLLA AQSMAIGTVM VRWVSKYSDP
301: IMATGWHMVI GGLPLLAISV INHDPVFNGS LQDLSTNDVI ALLYTSIFGS AVSYGVYFYS ATKGSLTKLS SLTFLTPMFA SIFGYLYLNE TFSSLQLVGA
401: AVTLVAIYLV NFPEGND

Arabidopsis Description

WAT1-related protein At3g02690, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93V85]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.