Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22028 | Canola | nucleus | 85.64 | 84.39 |
| AT1G02620.1 | Thale cress | endoplasmic reticulum | 12.38 | 20.49 |
| AT1G09180.1 | Thale cress | extracellular | 18.32 | 19.17 |
| AT1G56330.1 | Thale cress | endoplasmic reticulum | 18.32 | 19.17 |
| AT3G62560.1 | Thale cress | endoplasmic reticulum | 18.32 | 19.17 |
| AT4G02080.1 | Thale cress | endoplasmic reticulum | 18.32 | 19.17 |
| AT3G49870.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.86 | 15.22 |
| AT5G67560.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 13.37 | 14.67 |
| AT3G49860.1 | Thale cress | cytosol | 10.89 | 12.5 |
| AT5G37680.1 | Thale cress | cytosol | 11.39 | 12.5 |
Protein Annotations
| MapMan:35.2 | EntrezGene:827380 | ProteinID:AAB57800.1 | ProteinID:AAC78701.1 | ProteinID:AEE82123.1 | EMBL:AK117292 |
| ArrayExpress:AT4G02090 | EnsemblPlantsGene:AT4G02090 | RefSeq:AT4G02090 | TAIR:AT4G02090 | RefSeq:AT4G02090-TAIR-G | EnsemblPlants:AT4G02090.1 |
| TAIR:AT4G02090.1 | Unigene:At.34338 | EMBL:BT005223 | ProteinID:CAB80702.1 | InterPro:DUF4228_plant | RefSeq:NP_192118.1 |
| UniProt:O04712 | PFAM:PF14009 | PO:PO:0000293 | PO:PO:0009005 | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF19 |
| UniParc:UPI000000C58F | SEG:seg | : | : | : | : |
Description
AGAA.5 [Source:UniProtKB/TrEMBL;Acc:O04712]
Coordinates
chr4:+:923122..923893
Molecular Weight (calculated)
22317.8 Da
IEP (calculated)
10.118
GRAVY (calculated)
-0.447
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNVAGSRKL DAAGMAAGKV VLSDGRVQNL EEETTVAEIM LENPQHVVVE FDPSSISFNN DAKTVKRKLA PLPADKTLEP GKIYLVLPAK RSGGRAAKSS
101: SAVLTSEEMR KMLFSATAMV RSSFSYYEGI LPWFTTRSYK NNNPATDTVV AATSVGRLEA EMEEEDRPEF LSRQLSGRGW KPSLDPIREK KAKKKIHQRF
201: LL
101: SAVLTSEEMR KMLFSATAMV RSSFSYYEGI LPWFTTRSYK NNNPATDTVV AATSVGRLEA EMEEEDRPEF LSRQLSGRGW KPSLDPIREK KAKKKIHQRF
201: LL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.