CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATMG00516.1	Thale cress	endoplasmic reticulum	86.14	82.86

Protein Annotations

MapMan:35.1	GO:A0A078I8S9	UniProt:A0A078I8S9	EnsemblPlants:CDY45523	ProteinID:CDY45523	ProteinID:CDY45523.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005747	GO:GO:0005886	GO:GO:0008137	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0031966	GO:GO:0045271	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00082209001	InterPro:NADH_UbQ_OxRdtase_su1/FPO	PFAM:PF00146	PANTHER:PTHR11432	PANTHER:PTHR11432:SF3	TMHMM:TMhelix
UniParc:UPI0004EDECBB	:	:	:	:	:

Description

BnaCnng12820DBnaCnng12820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8S9]

Coordinates

chrLK032627:-:144832..145687

Molecular Weight (calculated)

11690.7 Da

IEP (calculated)

10.441

GRAVY (calculated)

0.380

Length

101 amino acids

Sequence
(BLAST)

001: MPRPDERSTE LHPYSPGPCT LFFPGGWPPI LDLPIFKKIP GSIWFSIKVL LFLFLYIWVR AAFPRYRYDQ LMGLGRKVFL PLSLARVVPV SGLLVTFQWL
101: P

Best Arabidopsis Sequence Match ( ATMG00516.1 )
(BLAST)

001: SSMGSALFFL GEYANMILMS GPCTLFFPGG WPPILDLPIF KKIPGSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR KVFLPLSLAR VVPVSGLLVT
101: FQWLP

Arabidopsis Description

NAD1CNADH dehydrogenase 1C [Source:TAIR;Acc:ATMG00516]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.