Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45523 | Canola | peroxisome, plasma membrane, vacuole | 82.86 | 86.14 |
Protein Annotations
| MapMan:35.1 | ArrayExpress:ATMG00516 | EnsemblPlantsGene:ATMG00516 | RefSeq:ATMG00516 | TAIR:ATMG00516 | RefSeq:ATMG00516-TAIR-G |
| EnsemblPlants:ATMG00516.1 | TAIR:ATMG00516.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 | GO:GO:0005886 | GO:GO:0008137 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009853 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016491 | GO:GO:0031966 | GO:GO:0045271 | GO:GO:0055114 | Symbol:NAD1C | InterPro:NADH_UbQ_OxRdtase_su1/FPO |
| PFAM:PF00146 | PANTHER:PTHR11432 | PANTHER:PTHR11432:SF3 | TMHMM:TMhelix | UniParc:UPI0008DB34F9 | : |
Description
NAD1CNADH dehydrogenase 1C [Source:TAIR;Acc:ATMG00516]
Coordinates
chrMt:-:143219..147048
Molecular Weight (calculated)
11948.2 Da
IEP (calculated)
10.445
GRAVY (calculated)
0.799
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: SSMGSALFFL GEYANMILMS GPCTLFFPGG WPPILDLPIF KKIPGSIWFS IKVLLFLFLY IWVRAAFPRY RYDQLMGLGR KVFLPLSLAR VVPVSGLLVT
101: FQWLP
101: FQWLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.