Factsheet for TraesCS5D01G432900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14420.1	TraesCS6A01G105000.1	AT5G56290.1	21798944
AT3G14420.1	TraesCS7A01G241500.5	AT5G56290.1	21798944
AT3G14420.1	TraesCS7B01G137000.2	AT5G56290.1	21798944
AT3G14420.1	TraesCS7D01G240500.3	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G426500.1	Wheat	golgi	99.73	99.73
TraesCS5A01G424400.1	Wheat	peroxisome	99.46	99.46
HORVU0Hr1G013900.4	Barley	peroxisome	85.68	96.94
EER93339	Sorghum	peroxisome	90.81	91.3
Os03t0786100-01	Rice	peroxisome	90.0	90.24
TraesCS2D01G251800.2	Wheat	peroxisome, plastid	86.76	87.23
PGSC0003DMT400071115	Potato	cytosol	87.3	87.06
Solyc07g056540.2.1	Tomato	plastid	87.03	86.79
GSMUA_Achr7P07880_001	Banana	peroxisome, plasma membrane, unclear	85.68	86.38
KRH43857	Soybean	peroxisome	85.68	85.44
KRH13608	Soybean	nucleus	85.68	85.44
AT3G14420.1	Thale cress	peroxisome	83.51	84.2
VIT_19s0093g00510.t01	Wine grape	peroxisome	84.32	84.1
AT3G14415.2	Thale cress	peroxisome	84.05	83.38
VIT_10s0003g03830.t01	Wine grape	peroxisome	83.51	83.06
TraesCS2D01G467700.1	Wheat	peroxisome	74.86	75.07
GSMUA_Achr4P22900_001	Banana	peroxisome	30.54	73.38
CDY70372	Canola	cytosol, mitochondrion, plastid	21.35	67.52
CDX88442	Canola	cytosol, mitochondrion, plastid	21.35	67.52
Os08t0198700-01	Rice	vacuole	12.7	67.14
TraesCS2D01G175900.1	Wheat	peroxisome	57.84	58.47
TraesCS5D01G274300.1	Wheat	peroxisome	56.22	56.83
CDY52449	Canola	mitochondrion	32.97	55.96
Bra035032.1-P	Field mustard	mitochondrion	32.97	55.96
CDX86782	Canola	cytosol, peroxisome, plastid	33.51	55.61
Os04t0623600-01	Rice	extracellular	11.08	41.84

Protein Annotations

MapMan:1.3.2	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	InterPro:Alpha-hydoxy_acid_DH_FMN	InterPro:FMN-dep_DH	InterPro:FMN_HAD
InterPro:FMN_hydac_DH_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR013785	InterPro:IPR037396
PFAM:PF01070	PIRSF:PIRSF000138	ScanProsite:PS00557	PFscan:PS51349	PANTHER:PTHR10578	PANTHER:PTHR10578:SF80
SUPFAM:SSF51395	EnsemblPlantsGene:TraesCS5D01G432900	EnsemblPlants:TraesCS5D01G432900.1	TIGR:cd02809	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:488857658..488864352

Molecular Weight (calculated)

40384.0 Da

IEP (calculated)

9.384

GRAVY (calculated)

-0.018

Length

370 amino acids

Sequence
(BLAST)

001: MAETVTNVSE YQAIAKQKLP KMAYDYYASG AEDEWTLKEN REAFSRILFR PRILIDVSTI DMTTSVLGMK ISMPIMISPT AFQKMAHPEG EYATARAASA
101: AGTVMTLSSW ATSSVEEVAS TGPGIRFFQL YVYKDRKVVE QLVRRAEKAG FKAIALTVDT PRLGRREADI KNRFVLPPGL TLKNFEGLNL GTMDQANDSG
201: LASYVAGQID RTLSWKDVKW LQSITTMPIL VKGVITAEDA RLAVHSGAAG IIVSNHGARQ LDYVPATISA LEEVVTAAQG RIPVYLDGGV RRGTDVFKAL
301: ALGASGVFIG RPVVFALAAE GEAGVRNVLR MMREEFELTM ALGGCTKLSD ITRNHIFTEG DRLGRPLPRM

Best Arabidopsis Sequence Match ( AT3G14415.1 )
(BLAST)

001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT PRHLPRL

Arabidopsis Description

GOX2 [Source:UniProtKB/TrEMBL;Acc:A0A178VD55]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.