Factsheet for PGSC0003DMT400030315

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, peroxisome, plastid

Predictor Summary:

cytosol 1
peroxisome 2
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	84.87	85.19
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	76.75	76.47
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	75.65	75.65
PGSC0003DMT400096536	Potato	cytosol, nucleus, peroxisome	63.84	75.22
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	73.8	74.07
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	73.8	73.8
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	36.53	73.33
PGSC0003DMT400088158	Potato	cytosol	68.27	71.98
CDY29207	Canola	plastid	38.38	70.27
Bra024488.1-P	Field mustard	plastid	38.38	70.27
CDY07809	Canola	plastid	38.01	69.59
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	23.25	69.23
AT3G55290.1	Thale cress	cytosol	69.0	66.79
AT3G55310.1	Thale cress	cytosol	68.63	66.67
PGSC0003DMT400072205	Potato	cytosol	70.11	65.52
Bra040871.1-P	Field mustard	cytosol	67.16	65.47
CDY29203	Canola	cytosol	67.16	65.47
CDY07814	Canola	cytosol	66.79	65.11
CDY03343	Canola	cytosol, nucleus, peroxisome	67.16	65.0
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	69.0	64.93
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	26.2	63.96
Bra002097.1-P	Field mustard	cytosol	65.31	63.67
Bra014757.1-P	Field mustard	cytosol	65.68	63.57
CDX73333	Canola	cytosol, nucleus, peroxisome	65.68	63.57
CDY48725	Canola	cytosol, peroxisome, plastid	67.16	63.41
CDX76107	Canola	cytosol, nucleus, peroxisome	65.31	63.21
Bra036706.1-P	Field mustard	cytosol	66.79	63.07
Bra014762.1-P	Field mustard	cytosol	64.94	62.86
CDY65313	Canola	cytosol, nucleus, peroxisome	65.31	62.77
CDY44938	Canola	cytosol, peroxisome, plastid	65.68	62.68
PGSC0003DMT400062814	Potato	cytosol	22.88	62.0
Bra014761.1-P	Field mustard	cytosol	57.93	61.81
Bra014760.1-P	Field mustard	plastid	52.4	61.74
KRH71621	Soybean	cytosol	64.21	61.7
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	63.84	61.35
PGSC0003DMT400018472	Potato	cytosol	62.36	61.23
KRH71588	Soybean	cytosol	63.47	60.99
Zm00001d031453_P001	Maize	cytosol	62.73	60.71
EES14264	Sorghum	cytosol, plastid	62.36	60.57
AT1G63380.2	Thale cress	cytosol	63.84	60.28
Os08t0510400-01	Rice	plastid	62.73	59.86
TraesCS7D01G245700.1	Wheat	cytosol	61.62	59.01
TraesCS7A01G427800.1	Wheat	mitochondrion	60.52	58.78
TraesCS7A01G246900.1	Wheat	plastid	61.25	58.66
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	59.78	58.06
GSMUA_Achr3P03770_001	Banana	cytosol	12.18	57.89
CDY40209	Canola	peroxisome	66.05	57.37
TraesCS7B01G144400.1	Wheat	cytosol	59.78	57.24
CDY02920	Canola	cytosol	49.82	56.96
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	65.31	56.73
TraesCS2D01G531000.1	Wheat	plastid	58.3	56.63
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	24.72	54.03
HORVU7Hr1G050760.2	Barley	vacuole	60.89	52.88
PGSC0003DMT400021571	Potato	cytosol	33.58	52.3
HORVU2Hr1G116450.1	Barley	plastid	57.93	49.53
KRH76339	Soybean	cytosol	19.56	46.9
Bra007151.1-P	Field mustard	cytosol	66.42	40.18
CDX73391	Canola	cytosol	65.31	37.74
CDX91138	Canola	cytosol, plastid	18.08	30.43
PGSC0003DMT400015737	Potato	cytosol	29.15	29.7

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1AU22	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	EnsemblPlantsGene:PGSC0003DMG400011601
PGSC:PGSC0003DMG400011601	EnsemblPlants:PGSC0003DMT400030315	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR44375
PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000294A4F0	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400011601]

Coordinates

chr12:-:52345494..52347285

Molecular Weight (calculated)

29176.3 Da

IEP (calculated)

9.393

GRAVY (calculated)

0.072

Length

271 amino acids

Sequence
(BLAST)

001: MEPWKDLSGK VVMVTGASSG IGLEFCLDLA KAGCNIIAAA RRVDRLKSLC NQINSNSKGP PRAIAIQLDV TSDGATIESA VQIAWDAFGH IDALVNNAGI
101: TGNVHSSLEL PEKEWDNVFN TNLKGAWLVS KYVCRRMRDA KQGGGSVINI SSLAGLNRGV FTGSLAYATS KMALDMLTKI MAVELGVDKI RVNSIAPGYF
201: KSEITGSLMQ KKWFDNYTRR TVPLRTLGTI DPALTSMVRY LIHDSSKYVS GNVFIVDAGT SLPGVPIFSS L

Best Arabidopsis Sequence Match ( AT3G55290.2 )
(BLAST)

001: MSNHQTVLKL LEPWCELKDK VVLVTGASSG IGREICLDLA KAGCQVIAAA RRVDRLNSLC SEINSFSSTG IQAAALELDV SSDAATIQKA VREAWDIFGK
101: IDALINNAGI RGNVKSSLDL SEDEWDNVFK TNLKGPWLVS KHVCMLMRDA KRGGSVINIS SIAGIRGMLP GGLAYACSKG GVDTMSRMMA LELGVHKIRV
201: NSIAPGLFKS EITQGLMQKE WLKNVTERTV PLKVQQTVDP GLTSLVRYLI HDSSQYISGN TYIVDSGATL PGVPIFSSL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.