Factsheet for PGSC0003DMT400096536

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400074198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55290.1	PGSC0003DMT400074198	AT1G51580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064364	Potato	peroxisome, plastid, vacuole	43.91	74.81
PGSC0003DMT400062814	Potato	cytosol	30.43	70.0
PGSC0003DMT400088158	Potato	cytosol	74.78	66.93
PGSC0003DMT400036566	Potato	cytosol, extracellular, nucleus	26.09	65.93
PGSC0003DMT400014256	Potato	cytosol, nucleus, plastid	31.74	65.77
PGSC0003DMT400061270	Potato	cytosol, nucleus, peroxisome	76.96	65.07
PGSC0003DMT400092434	Potato	cytosol, nucleus, peroxisome	75.22	64.07
PGSC0003DMT400030315	Potato	nucleus, peroxisome, plastid	75.22	63.84
PGSC0003DMT400030316	Potato	nucleus, peroxisome, plastid	73.04	62.22
PGSC0003DMT400036569	Potato	nucleus, peroxisome, plastid	71.74	60.89
Bra024488.1-P	Field mustard	plastid	38.26	59.46
CDY29207	Canola	plastid	38.26	59.46
PGSC0003DMT400083885	Potato	nucleus, peroxisome, plastid	70.0	59.41
CDY07809	Canola	plastid	37.83	58.78
AT3G55310.1	Thale cress	cytosol	67.39	55.56
PGSC0003DMT400072205	Potato	cytosol	70.0	55.52
AT3G55290.1	Thale cress	cytosol	67.39	55.36
CDX73333	Canola	cytosol, nucleus, peroxisome	67.39	55.36
CDX76107	Canola	cytosol, nucleus, peroxisome	66.96	55.0
Bra002097.1-P	Field mustard	cytosol	66.09	54.68
Bra014757.1-P	Field mustard	cytosol	66.52	54.64
CDY65313	Canola	cytosol, nucleus, peroxisome	66.96	54.61
CDY44938	Canola	cytosol, peroxisome, plastid	67.39	54.58
CDY03343	Canola	cytosol, nucleus, peroxisome	66.09	54.29
Bra014762.1-P	Field mustard	cytosol	65.65	53.93
Bra040871.1-P	Field mustard	cytosol	64.78	53.6
CDY29203	Canola	cytosol	64.78	53.6
KRH71588	Soybean	cytosol	65.65	53.55
CDY48725	Canola	cytosol, peroxisome, plastid	66.52	53.31
GSMUA_Achr3P03770_001	Banana	cytosol	13.04	52.63
Bra036706.1-P	Field mustard	cytosol	65.65	52.61
Bra014760.1-P	Field mustard	plastid	52.61	52.61
PGSC0003DMT400018472	Potato	cytosol	63.04	52.54
CDY07814	Canola	cytosol	63.48	52.52
Bra014761.1-P	Field mustard	cytosol	57.83	52.36
AT1G62610.4	Thale cress	cytosol, nucleus, peroxisome	63.91	52.13
KRH71621	Soybean	cytosol	63.48	51.77
AT3G46170.1	Thale cress	cytosol, extracellular, peroxisome	64.78	51.74
AT1G63380.2	Thale cress	cytosol	63.91	51.22
Os08t0510400-01	Rice	plastid	63.04	51.06
TraesCS7D01G245700.1	Wheat	cytosol	60.87	49.47
EES14264	Sorghum	cytosol, plastid	60.0	49.46
Zm00001d031453_P001	Maize	cytosol	60.0	49.29
TraesCS7A01G246900.1	Wheat	plastid	60.43	49.12
TraesCS7A01G427800.1	Wheat	mitochondrion	59.57	49.1
TraesCS7B01G144400.1	Wheat	cytosol	59.57	48.41
PGSC0003DMT400021572	Potato	cytosol, mitochondrion	26.09	48.39
TraesCS2A01G528100.1	Wheat	cytosol, peroxisome, plastid	58.7	48.39
AT2G17845.1	Thale cress	golgi, peroxisome, plastid	65.22	48.08
CDY40209	Canola	peroxisome	64.78	47.76
TraesCS2D01G531000.1	Wheat	plastid	56.96	46.95
KRH76339	Soybean	cytosol	23.04	46.9
CDY02920	Canola	cytosol	46.96	45.57
HORVU7Hr1G050760.2	Barley	vacuole	60.43	44.55
HORVU2Hr1G116450.1	Barley	plastid	57.39	41.64
PGSC0003DMT400021571	Potato	cytosol	28.26	37.36
Bra007151.1-P	Field mustard	cytosol	65.22	33.48
CDX73391	Canola	cytosol	66.09	32.41
CDX91138	Canola	cytosol, plastid	21.3	30.43
PGSC0003DMT400015737	Potato	cytosol	27.39	23.68

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1DYN5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG400046107	PGSC:PGSC0003DMG400046107	EnsemblPlants:PGSC0003DMT400096536	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR44375	PANTHER:PTHR44375:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002963E0F
SEG:seg	:	:	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400046107]

Coordinates

chr12:-:60932180..60933273

Molecular Weight (calculated)

24421.9 Da

IEP (calculated)

8.829

GRAVY (calculated)

0.272

Length

230 amino acids

Sequence
(BLAST)

001: MEPRKDLSGK VVMVTGASSG IGLEFCLDLA KAGCSIIAAA RRIDRLDSLC NDINSEGIRR AFTLELDVMS NGATIKGAVQ RAWDAFGRIN VLINNAGIRG
101: SGGGSVINIS SVSGLNRVLV PGGLAYASSK MALDMLTRMM ALELGVHNIR VNSIAPGVYK SHITESLMQK EGFNNVILRT VPLRYLGMTD PALTSLVKYL
201: IHDSSEYVSG NIFIVDSGGT LTGVPIFSSL

Best Arabidopsis Sequence Match ( AT2G17845.1 )
(BLAST)

001: MSFWFRDKSL YVMGISFSTK EHTKRNNMSN HQTVREILLL LYLTCELKDK VVLVTGASSG IGREVCLDLA KAGCKIIAAA RRVDRLKSLC SEINRFEYSA
101: GIQAEALELD VSSDAATVQK AVKKAWEIFG KIDALINNAG FRGNVKSSLD LSEDEWDKVF KTNLTGTWLV SKYVCILMRD AKRGGGSVIN ISSVSWLHRG
201: QVPGGVAYAC SKGGVDTMTR MMALELGVYK IRVNSIAPGL LKSEITQGLM QKEWLKTVIE RTVPLKVQQT VDPGLTSLLR YLVHDSSKYI SGNTYIVDAG
301: ASLVGLPIFS SL

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IPI3]
SUBAcon: [golgi,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.