CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH69305
KRH71588
KRH71621
KRH76339

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	KRH69305	AT1G14340.1	21798944
AT5G06370.1	KRH71588	AT3G55290.1	21798944
AT5G06370.1	KRH71621	AT3G55290.1	21798944
AT5G06370.1	KRH76339	AT3G55290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72187	Soybean	cytosol	95.75	95.75
PGSC0003DMT400055040	Potato	cytosol	75.68	75.97
VIT_08s0105g00270.t01	Wine grape	cytosol	76.83	75.95
Solyc01g007110.2.1	Tomato	cytosol	74.9	75.19
Bra005893.1-P	Field mustard	cytosol	73.36	73.08
CDY55757	Canola	cytosol	72.97	72.69
CDX81002	Canola	cytosol	72.59	72.31
AT5G06370.1	Thale cress	cytosol	71.81	71.81
EES19605	Sorghum	cytosol	67.18	63.27
TraesCS1B01G284400.1	Wheat	cytosol	65.64	61.59
HORVU1Hr1G074130.1	Barley	cytosol	64.86	61.09
TraesCS1A01G275200.1	Wheat	cytosol	64.48	60.51
TraesCS1D01G274800.1	Wheat	cytosol	63.71	59.78
KRG98048	Soybean	cytosol	52.9	56.38
KRH17250	Soybean	cytosol	53.28	54.33
KRG98046	Soybean	cytosol	29.34	50.67
KRH30736	Soybean	cytosol, peroxisome, plastid	38.22	49.5
KRG97211	Soybean	cytosol	48.65	48.65
KRH30737	Soybean	cytosol	46.72	48.21
KRH68934	Soybean	cytosol	46.72	46.9
KRG98047	Soybean	cytosol, golgi, peroxisome	10.04	23.42

Protein Annotations

EMBL:ACUP02006182	EMBL:BT096891	EnsemblPlants:KRH32851	EnsemblPlantsGene:GLYMA_10G081500	EntrezGene:100791242	Gene3D:3.90.1720.10
InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	PFAM:PF04970	ProteinID:KRH32851	ProteinID:KRH32851.1
UniParc:UPI0001B16D61	UniProt:C6TGY1	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:9707028..9710474

Molecular Weight (calculated)

27950.8 Da

IEP (calculated)

7.413

GRAVY (calculated)

0.088

Length

259 amino acids

Sequence
(BLAST)

001: MGLLSNRVTR ESLKPGDHIY SWRTAYIYAH HGIYVGDDKV IHFTRHGQEV GTGTALDLLL ISSGPAKPRE SCPTCTAPQE EHGVISSCMN CFLAGGVLYR
101: FEYAVTPALF LAKARGGTCT LAVSDDDDIV VHRAKYLLEN GFGCYNVFKK NCEDFAIYCK TGLLEIGQSG QAVSIIGGPL AAALSSPLRM VTTNVYGMAA
201: TAVGVYCASR YMADIGMRPN VVKVPVEELT SRLATGLLQV VEPQIPTNIA RQSPQLVTQ

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.