Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g007110.2.1 | Tomato | cytosol | 97.67 | 97.67 |
| VIT_08s0105g00270.t01 | Wine grape | cytosol | 80.23 | 79.01 |
| Bra005893.1-P | Field mustard | cytosol | 78.68 | 78.08 |
| CDY55757 | Canola | cytosol | 78.29 | 77.69 |
| AT5G06370.1 | Thale cress | cytosol | 77.52 | 77.22 |
| CDX81002 | Canola | cytosol | 77.52 | 76.92 |
| KRH32851 | Soybean | cytosol | 75.97 | 75.68 |
| KRH72187 | Soybean | cytosol | 75.97 | 75.68 |
| EES19605 | Sorghum | cytosol | 70.54 | 66.18 |
| TraesCS1A01G275200.1 | Wheat | cytosol | 68.22 | 63.77 |
| TraesCS1B01G284400.1 | Wheat | cytosol | 67.83 | 63.41 |
| TraesCS1D01G274800.1 | Wheat | cytosol | 67.83 | 63.41 |
| HORVU1Hr1G074130.1 | Barley | cytosol | 67.05 | 62.91 |
| VIT_04s0023g02850.t01 | Wine grape | mitochondrion, peroxisome, vacuole | 32.95 | 56.29 |
| PGSC0003DMT400045756 | Potato | cytosol | 53.1 | 50.74 |
| PGSC0003DMT400000664 | Potato | cytosol | 48.84 | 49.61 |
| PGSC0003DMT400012897 | Potato | mitochondrion, nucleus | 50.39 | 46.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400055040 | EnsemblPlantsGene:PGSC0003DMG400021354 | EntrezGene:102578879 | Gene3D:3.90.1720.10 | InterPro:LRAT-like_dom | InterPro:Papain_like_cys_pep_sf |
| PANTHER:PTHR13943 | PANTHER:PTHR13943:SF44 | PFAM:PF04970 | PGSC:PGSC0003DMG400021354 | RefSeq:XP_006348469.1 | SUPFAM:SSF54001 |
| UniParc:UPI00029619D0 | UniProt:M1BX90 | MapMan:35.2 | : | : | : |
Description
NC domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021354]
Coordinates
chr1:+:3068949..3071477
Molecular Weight (calculated)
27671.5 Da
IEP (calculated)
7.413
GRAVY (calculated)
0.276
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDNKV IHFTRRGQEV GTGTVLDHIL VSSIPNRSIV PCTVCTPPSD GHGVVSSCLD CFLAGGILYR
101: FEYAVTPAIF LAKARGGTCT LAVSDPDDIV VHRANYLLTN GFGLYNVFKN NCEDFAIYCK TGLLVVDDST MGQSGQAVSI IGGPLAAVMS TPLRLVTTNV
201: YGMVATAVGV YCASRYAADI GMRRDVMKVC AEDLTTRLTT GLLQVVEPSL AVLPPTVS
101: FEYAVTPAIF LAKARGGTCT LAVSDPDDIV VHRANYLLTN GFGLYNVFKN NCEDFAIYCK TGLLVVDDST MGQSGQAVSI IGGPLAAVMS TPLRLVTTNV
201: YGMVATAVGV YCASRYAADI GMRRDVMKVC AEDLTTRLTT GLLQVVEPSL AVLPPTVS
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Arabidopsis Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.