Factsheet for PGSC0003DMT400012897

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g055850.1.1	Tomato	cytosol	83.21	81.47
PGSC0003DMT400000664	Potato	cytosol	58.93	64.96
Os09t0526800-01	Rice	cytosol	56.43	58.96
EER99225	Sorghum	cytosol	55.36	57.84
Zm00001d021248_P002	Maize	cytosol	55.36	57.84
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	55.0	57.46
TraesCS5D01G321200.1	Wheat	cytosol	55.0	57.46
Zm00001d006180_P001	Maize	cytosol	54.64	57.09
TraesCS5B01G315900.1	Wheat	cytosol	54.29	56.72
GSMUA_Achr9P00880_001	Banana	cytosol	54.29	56.3
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.64	54.26
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.64	54.26
HORVU7Hr1G056880.1	Barley	cytosol	54.29	54.09
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	54.29	53.9
Zm00001d052741_P001	Maize	cytosol	52.14	51.41
PGSC0003DMT400055040	Potato	cytosol	46.43	50.39
Os08t0546900-01	Rice	cytosol, plasma membrane	47.14	50.38
EES14126	Sorghum	nucleus	52.5	49.0
Zm00001d031737_P001	Maize	cytosol	50.0	48.28
PGSC0003DMT400045756	Potato	cytosol	42.86	44.44
HORVU5Hr1G080870.3	Barley	plastid	47.86	39.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400012897	EnsemblPlantsGene:PGSC0003DMG400005020	EntrezGene:102583473	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32
PFAM:PF04970	PGSC:PGSC0003DMG400005020	RefSeq:XP_006360725.1	SEG:seg	UniParc:UPI0002965FFD	UniProt:M1A1Z1
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005020]

Coordinates

chr12:+:53467970..53471884

Molecular Weight (calculated)

30384.1 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.156

Length

280 amino acids

Sequence
(BLAST)

001: MGLLTHKVER SEIASGDHIY TWRTVFAYSH HGIYVGGSKV VHFTRDQNVV SGDPILFSAP LNCSSASSTN VSSTCTNIPD CGFQQKESGV VLSCLDCFLG
101: EEGLLYRFDY GASPSVFLTK LRGGTCTTAQ SDPPEAVIHR AMYLLQNGFG SYDVFKNNCE DFALYCKTGL LVLDQGALGR SGQAASVIGA PLAAIASSPL
201: KLFMTSPAGL VIATAGMYCL TRYATDIGVR TDVTKVKVEE LTSFNNCKSS KRRKNENHCD TREVTLNQTD TPAKKRRKCD

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.