Factsheet for PGSC0003DMT400000664

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096150.2.1	Tomato	cytosol	96.06	96.06
VIT_15s0046g00120.t01	Wine grape	cytosol	78.35	75.95
KRG97211	Soybean	cytosol	75.2	73.75
CDY51720	Canola	cytosol	71.26	73.28
KRH68934	Soybean	cytosol	74.41	73.26
AT1G01225.1	Thale cress	cytosol	74.8	73.08
Bra037403.1-P	Field mustard	cytosol	70.47	71.89
CDY07154	Canola	cytosol	70.47	71.89
Bra032627.1-P	Field mustard	cytosol	72.83	70.88
CDY37998	Canola	cytosol	72.44	68.4
AT4G00905.1	Thale cress	cytosol	69.69	67.3
GSMUA_Achr9P00880_001	Banana	cytosol	68.5	64.44
Os09t0526800-01	Rice	cytosol	64.96	61.57
Zm00001d021248_P002	Maize	cytosol	64.96	61.57
Zm00001d006180_P001	Maize	cytosol	64.96	61.57
EER99225	Sorghum	cytosol	64.96	61.57
TraesCS5B01G315900.1	Wheat	cytosol	64.17	60.82
TraesCS5D01G321200.1	Wheat	cytosol	64.17	60.82
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	63.78	60.45
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	64.96	58.93
HORVU7Hr1G056880.1	Barley	cytosol	62.6	56.58
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	62.6	56.38
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	62.6	56.38
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	62.6	56.38
Os08t0546900-01	Rice	cytosol, plasma membrane	55.91	54.2
EES14126	Sorghum	nucleus	62.6	53.0
Zm00001d052741_P001	Maize	cytosol	58.27	52.11
Zm00001d031737_P001	Maize	cytosol	57.48	50.34
PGSC0003DMT400055040	Potato	cytosol	49.61	48.84
PGSC0003DMT400045756	Potato	cytosol	48.43	45.56
HORVU5Hr1G080870.3	Barley	plastid	55.91	42.26

Protein Annotations

EnsemblPlants:PGSC0003DMT400000664	EnsemblPlantsGene:PGSC0003DMG400000237	EntrezGene:102589709	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32
PFAM:PF04970	PGSC:PGSC0003DMG400000237	RefSeq:XP_006339735.1	SEG:seg	UniParc:UPI000294B24C	UniProt:M0ZH46
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000237]

Coordinates

chr1:-:73720908..73725220

Molecular Weight (calculated)

27179.5 Da

IEP (calculated)

6.496

GRAVY (calculated)

0.167

Length

254 amino acids

Sequence
(BLAST)

001: MGLLTNRVDR SEIKPGDHIY TYRAVFAYSH HGIFVGGSKV VHFTRVEGSS DAANEISGLS SSCPIFPDCG FRLPNSGVVL SCLNCFLRTG SLYSFEYGVS
101: PSVFLSKVRG GTCTTAVSDP PEMVIHRAMH LLQNGFGNYD VFQNNCEDFA LYCKTGLLTL DRLGVGRSGQ ASSVVGAPLA ALLSSPLKFL IPSPVGVATV
201: TAGMYCMSRY ATDIGVRSDV IKVAVEDLAV NLGWGSSNEG AIVEHDDSIH LLDR

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.