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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • plastid 1
  • plasma membrane 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000664 Potato cytosol 96.06 96.06
Solyc05g050520.2.1 Tomato cytosol 75.98 75.69
VIT_15s0046g00120.t01 Wine grape cytosol 77.56 75.19
KRG97211 Soybean cytosol 75.59 74.13
KRH68934 Soybean cytosol 74.41 73.26
CDY51720 Canola cytosol 70.87 72.87
AT1G01225.1 Thale cress cytosol 74.02 72.31
CDY07154 Canola cytosol 70.47 71.89
Bra037403.1-P Field mustard cytosol 70.08 71.49
Bra032627.1-P Field mustard cytosol 72.05 70.11
CDY37998 Canola cytosol 72.05 68.03
AT4G00905.1 Thale cress cytosol 69.29 66.92
GSMUA_Achr9P00880_001 Banana cytosol 68.5 64.44
Os09t0526800-01 Rice cytosol 66.14 62.69
Zm00001d021248_P002 Maize cytosol 65.75 62.31
EER99225 Sorghum cytosol 65.75 62.31
TraesCS5B01G315900.1 Wheat cytosol 64.57 61.19
TraesCS5D01G321200.1 Wheat cytosol 64.57 61.19
Zm00001d006180_P001 Maize cytosol 64.17 60.82
TraesCS5A01G314900.1 Wheat cytosol, mitochondrion, nucleus, peroxisome 64.17 60.82
Solyc12g055850.1.1 Tomato cytosol 64.57 57.34
HORVU7Hr1G056880.1 Barley cytosol 62.6 56.58
TraesCS7A01G270500.1 Wheat mitochondrion, nucleus, peroxisome, plastid 62.6 56.38
TraesCS7B01G168500.1 Wheat cytosol, mitochondrion, nucleus, plastid 62.6 56.38
TraesCS7D01G270700.1 Wheat cytosol, mitochondrion, nucleus, plastid 62.6 56.38
Os08t0546900-01 Rice cytosol, plasma membrane 55.51 53.82
EES14126 Sorghum nucleus 62.2 52.67
Zm00001d052741_P001 Maize cytosol 58.66 52.46
Zm00001d031737_P001 Maize cytosol 57.48 50.34
Solyc01g007110.2.1 Tomato cytosol 49.61 48.84
Solyc02g081580.2.1 Tomato cytosol 48.43 45.56
HORVU5Hr1G080870.3 Barley plastid 56.3 42.56
Protein Annotations
EnsemblPlants:Solyc01g096150.2.1EnsemblPlantsGene:Solyc01g096150.2InterPro:LRAT-like_domPANTHER:PTHR13943PANTHER:PTHR13943:SF32PFAM:PF04970
SEG:segUniParc:UPI00027676CBUniProt:K4B004MapMan:35.2::
Description
No Description!
Coordinates
chr1:-:87255904..87259272
Molecular Weight (calculated)
27293.7 Da
IEP (calculated)
6.700
GRAVY (calculated)
0.135
Length
254 amino acids
Sequence
(BLAST)
001: MGLLTNRVDR SEIKPGDHIY TYRAVFAYSH HGIFVGGSKV VHFTRVEGSS DAANEISGIS SSCPIFPDCG FRLPNSGVVL SCLNCFLRNG SLYSFEYGVS
101: PSVFLSKVRG GTCTTAVSDP PEMVIHRAMH LLQNGFGNYD VFQNNCEDFA LYCKTGLLTL DRLGVGRSGQ ASSVVGAPLA ALLSSPLKFL IPSPVGMATV
201: TAGMYCMSRY ATDIGVRSDV IKVAVEDLAV NLGWGRSNEG AIVEHDDSIH LLDR
Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.