Factsheet for Solyc05g050520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 4
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096150.2.1	Tomato	cytosol	75.69	75.98
KRG97211	Soybean	cytosol	71.76	70.66
VIT_15s0046g00120.t01	Wine grape	cytosol	72.16	70.23
KRH68934	Soybean	cytosol	70.98	70.16
CDY51720	Canola	cytosol	67.06	69.23
CDY07154	Canola	cytosol	67.45	69.08
Bra037403.1-P	Field mustard	cytosol	66.67	68.27
Bra032627.1-P	Field mustard	cytosol	69.02	67.43
AT1G01225.1	Thale cress	cytosol	68.63	67.31
AT4G00905.1	Thale cress	cytosol	68.63	66.54
CDY37998	Canola	cytosol	68.24	64.68
Os09t0526800-01	Rice	cytosol	64.71	61.57
Zm00001d021248_P002	Maize	cytosol	64.71	61.57
EER99225	Sorghum	cytosol	64.31	61.19
GSMUA_Achr9P00880_001	Banana	cytosol	64.31	60.74
Zm00001d006180_P001	Maize	cytosol	63.53	60.45
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	61.96	58.96
TraesCS5D01G321200.1	Wheat	cytosol	61.96	58.96
TraesCS5B01G315900.1	Wheat	cytosol	61.57	58.58
Solyc12g055850.1.1	Tomato	cytosol	63.53	56.64
HORVU7Hr1G056880.1	Barley	cytosol	61.18	55.52
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.18	55.32
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.18	55.32
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	60.78	54.96
Os08t0546900-01	Rice	cytosol, plasma membrane	54.12	52.67
EES14126	Sorghum	nucleus	58.04	49.33
Zm00001d031737_P001	Maize	cytosol	56.08	49.31
Zm00001d052741_P001	Maize	cytosol	54.9	49.3
Solyc01g007110.2.1	Tomato	cytosol	47.45	46.9
Solyc02g081580.2.1	Tomato	cytosol	45.88	43.33
HORVU5Hr1G080870.3	Barley	plastid	53.73	40.77

Protein Annotations

EnsemblPlants:Solyc05g050520.2.1	EnsemblPlantsGene:Solyc05g050520.2	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF73	PFAM:PF04970
SEG:seg	UniParc:UPI0002767075	UniProt:K4C184	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5:+:60661910..60665491

Molecular Weight (calculated)

27548.9 Da

IEP (calculated)

6.920

GRAVY (calculated)

0.007

Length

255 amino acids

Sequence
(BLAST)

001: MGLLTNRVGR NEIKPGDHIY TYRAVFAYSH HGIFVGGSKV VHFNRLEAFS DADDDEMSDL SSSCPTFPDC GFKLPNSGVV LSCLDCFLRD GSLYNFDYGV
101: SPSVFLTRVR GGTCTTAASD PPEMIIHRAM YLLQNGFGHY NVFLNNCEDF ALYCKTGLLT ADSRGVGSSG QASSIIGAPL AALLSSPLKL LIPSPVGVAT
201: LTAGMYCMNR YATDIGVRSD VVKVAVENLE EKLGYGNSHG RVIVEHRSLN RGTAR

Best Arabidopsis Sequence Match ( AT4G00905.1 )
(BLAST)

001: MGVLTNKVER DELKPGDHIY TYRAVFAYSH HGVFVGGCKV VHFKPEHSLI SPTLASSSSS SSSSVSEVND SSEAPCPTYP DCGYKRPKSG VVLSCLDCFL
101: KKGSLYRFDY GVSSSIFLTR FRGGTCTTAP SDPLQTVIHR AMHLLQNGFG NYNVFQNNCE DFALYCKTGL LILDKNGVGR SGQASSIIGA PLAALLSSPL
201: TLLIPNPVGV ATVTAGMYCM SRYATDIGVR NDVIKVPVED LALNLGLKPL KRKRKACDTS ISR

Arabidopsis Description

NC domain-containing protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q3EAE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.