Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14126 | Sorghum | nucleus | 76.76 | 72.67 |
| TraesCS7A01G270500.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 66.9 | 67.38 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 66.55 | 67.26 |
| TraesCS7B01G168500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 66.55 | 67.02 |
| Zm00001d031737_P001 | Maize | cytosol | 67.96 | 66.55 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 65.49 | 65.96 |
| Zm00001d006180_P001 | Maize | cytosol | 60.56 | 64.18 |
| Os08t0546900-01 | Rice | cytosol, plasma membrane | 59.15 | 64.12 |
| GSMUA_Achr9P00880_001 | Banana | cytosol | 60.21 | 63.33 |
| Zm00001d021248_P002 | Maize | cytosol | 59.15 | 62.69 |
| Solyc01g096150.2.1 | Tomato | cytosol | 52.46 | 58.66 |
| VIT_15s0046g00120.t01 | Wine grape | cytosol | 53.87 | 58.4 |
| PGSC0003DMT400000664 | Potato | cytosol | 52.11 | 58.27 |
| CDY51720 | Canola | cytosol | 48.24 | 55.47 |
| KRG97211 | Soybean | cytosol | 50.35 | 55.21 |
| KRH68934 | Soybean | cytosol | 50.0 | 55.04 |
| Bra037403.1-P | Field mustard | cytosol | 48.24 | 55.02 |
| Solyc05g050520.2.1 | Tomato | cytosol | 49.3 | 54.9 |
| CDY07154 | Canola | cytosol | 47.89 | 54.62 |
| AT1G01225.1 | Thale cress | cytosol | 50.0 | 54.62 |
| Bra032627.1-P | Field mustard | cytosol | 49.3 | 53.64 |
| CDY37998 | Canola | cytosol | 50.0 | 52.79 |
| PGSC0003DMT400012897 | Potato | mitochondrion, nucleus | 51.41 | 52.14 |
| AT4G00905.1 | Thale cress | cytosol | 47.54 | 51.33 |
| Solyc12g055850.1.1 | Tomato | cytosol | 49.3 | 48.95 |
| Zm00001d021614_P001 | Maize | mitochondrion | 41.2 | 38.11 |
| Zm00001d046887_P001 | Maize | cytosol | 13.38 | 17.67 |
Protein Annotations
| EnsemblPlants:Zm00001d052741_P001 | EnsemblPlants:Zm00001d052741_T001 | EnsemblPlantsGene:Zm00001d052741 | EntrezGene:103654437 | InterPro:LRAT-like_dom | PANTHER:PTHR13943 |
| PANTHER:PTHR13943:SF43 | PFAM:PF04970 | ProteinID:AQK57926.1 | SEG:seg | UniParc:UPI0002216D48 | UniProt:K7UBM1 |
| MapMan:35.2 | : | : | : | : | : |
Description
NC domain-containing protein-related
Coordinates
chr4:-:199478963..199481434
Molecular Weight (calculated)
30029.1 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.023
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSQRVER SEMEPGDHIY TWRAGYTYSH HGIYVGGSKV VHFTRKREAG GAGLDSAIAV SSLLLSRGSD ECPTFPDCGF QLPDSGVVLT CVDCFLGGGA
101: LHRFEYGVPA AAFLAKVRGG TSTTARADPG DAAVRRAMHL LRHGFGDYDV FENNCEDFAL YCKTGLLLLP AAAAGGGVGI GRSGQAAAAL GVPLAALFST
201: PFKLVAAGPL GMAAVTAGVY CAGRYVTDIG VRTDVVKVEV KDLSAHLGWR RARAQEKKKK QQQEEAPAAA KSLLPLKRKR ETCV
101: LHRFEYGVPA AAFLAKVRGG TSTTARADPG DAAVRRAMHL LRHGFGDYDV FENNCEDFAL YCKTGLLLLP AAAAGGGVGI GRSGQAAAAL GVPLAALFST
201: PFKLVAAGPL GMAAVTAGVY CAGRYVTDIG VRTDVVKVEV KDLSAHLGWR RARAQEKKKK QQQEEAPAAA KSLLPLKRKR ETCV
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.