Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G270500.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 98.23 | 98.23 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 95.04 | 95.04 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 91.49 | 91.81 |
| Os08t0546900-01 | Rice | cytosol, plasma membrane | 72.34 | 77.86 |
| EES14126 | Sorghum | nucleus | 75.18 | 70.67 |
| TraesCS5B01G315900.1 | Wheat | cytosol | 66.67 | 70.15 |
| GSMUA_Achr9P00880_001 | Banana | cytosol | 64.89 | 67.78 |
| Zm00001d052741_P001 | Maize | cytosol | 67.02 | 66.55 |
| PGSC0003DMT400000664 | Potato | cytosol | 56.38 | 62.6 |
| Solyc01g096150.2.1 | Tomato | cytosol | 56.38 | 62.6 |
| VIT_15s0046g00120.t01 | Wine grape | cytosol | 57.45 | 61.83 |
| Solyc05g050520.2.1 | Tomato | cytosol | 55.32 | 61.18 |
| Zm00001d031737_P001 | Maize | cytosol | 62.77 | 61.03 |
| CDY51720 | Canola | cytosol | 52.84 | 60.32 |
| AT1G01225.1 | Thale cress | cytosol | 55.32 | 60.0 |
| KRG97211 | Soybean | cytosol | 54.96 | 59.85 |
| Bra032627.1-P | Field mustard | cytosol | 55.32 | 59.77 |
| KRH68934 | Soybean | cytosol | 54.26 | 59.3 |
| Bra037403.1-P | Field mustard | cytosol | 52.13 | 59.04 |
| CDY07154 | Canola | cytosol | 51.42 | 58.23 |
| CDY37998 | Canola | cytosol | 55.32 | 57.99 |
| AT4G00905.1 | Thale cress | cytosol | 51.42 | 55.13 |
| PGSC0003DMT400012897 | Potato | mitochondrion, nucleus | 54.26 | 54.64 |
| Solyc12g055850.1.1 | Tomato | cytosol | 53.9 | 53.15 |
| TraesCS1B01G284400.1 | Wheat | cytosol | 48.58 | 49.64 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G168500.1 | EnsemblPlantsGene:TraesCS7B01G168500 | InterPro:LRAT-like_dom | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF43 | PFAM:PF04970 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:236330512..236332798
Molecular Weight (calculated)
30320.6 Da
IEP (calculated)
8.551
GRAVY (calculated)
-0.042
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSHRVER SELKPGDHIY TWRAAYSYSH HGIYVGGSKV VHFTTKKEAG TAGLDSAVAI SSLISAGSPE CPTFPDCGFQ LPDSGVILTC LDCFLRDGAL
101: HGFEYGVPPA VFLAKLRGGT CTTAASDPAD AVVHRAMYLL QNGFGSYDVF ENNCEDFALY CKTGLLLPPE KGIGRSGQAA SAVGVPLAAL FSTPFRLMSA
201: GPLGMAAVTA GMYCAGRYIT DIGVRKDVVK VEVENLSAHL GLRRAKAEEE WVKKKQQPAK VTTRLLPLKR KRDSDLHLQS VK
101: HGFEYGVPPA VFLAKLRGGT CTTAASDPAD AVVHRAMYLL QNGFGSYDVF ENNCEDFALY CKTGLLLPPE KGIGRSGQAA SAVGVPLAAL FSTPFRLMSA
201: GPLGMAAVTA GMYCAGRYIT DIGVRKDVVK VEVENLSAHL GLRRAKAEEE WVKKKQQPAK VTTRLLPLKR KRDSDLHLQS VK
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.