Factsheet for VIT_15s0046g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 3
unclear 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97211	Soybean	cytosol	77.48	78.38
PGSC0003DMT400000664	Potato	cytosol	75.95	78.35
Solyc01g096150.2.1	Tomato	cytosol	75.19	77.56
KRH68934	Soybean	cytosol	75.95	77.13
AT1G01225.1	Thale cress	cytosol	72.14	72.69
Bra032627.1-P	Field mustard	cytosol	72.14	72.41
Solyc05g050520.2.1	Tomato	cytosol	70.23	72.16
CDY51720	Canola	cytosol	67.56	71.66
CDY07154	Canola	cytosol	67.18	70.68
Bra037403.1-P	Field mustard	cytosol	66.03	69.48
CDY37998	Canola	cytosol	70.99	69.14
AT4G00905.1	Thale cress	cytosol	68.32	68.06
GSMUA_Achr9P00880_001	Banana	cytosol	68.7	66.67
EER99225	Sorghum	cytosol	65.27	63.81
Zm00001d006180_P001	Maize	cytosol	64.89	63.43
Zm00001d021248_P002	Maize	cytosol	64.5	63.06
Os09t0526800-01	Rice	cytosol	63.36	61.94
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	62.6	61.19
TraesCS5B01G315900.1	Wheat	cytosol	62.21	60.82
TraesCS5D01G321200.1	Wheat	cytosol	62.21	60.82
HORVU7Hr1G056880.1	Barley	cytosol	62.21	58.01
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	62.21	57.8
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.83	57.45
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.45	57.09
Os08t0546900-01	Rice	cytosol, plasma membrane	54.2	54.2
Zm00001d052741_P001	Maize	cytosol	58.4	53.87
EES14126	Sorghum	nucleus	61.07	53.33
Zm00001d031737_P001	Maize	cytosol	56.49	51.03
VIT_04s0069g01180.t01	Wine grape	cytosol	46.95	50.41
VIT_08s0105g00270.t01	Wine grape	cytosol	49.24	49.24
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	25.19	43.71
HORVU5Hr1G080870.3	Barley	plastid	54.96	42.86
VIT_00s0270g00030.t01	Wine grape	cytosol	43.13	40.5

Protein Annotations

EntrezGene:100253490	wikigene:100253490	MapMan:35.2	UniProt:A5AP48	EMBL:AM431228	ProteinID:CAN66977
ProteinID:CAN66977.1	ProteinID:CCB62557	ProteinID:CCB62557.1	EMBL:FN596755	EntrezGene:LOC100253490	wikigene:LOC100253490
InterPro:LRAT-like_dom	PFAM:PF04970	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32	TIGR:TC66740	UniParc:UPI000151EF89
ArrayExpress:VIT_15s0046g00120	EnsemblPlantsGene:VIT_15s0046g00120	EnsemblPlants:VIT_15s0046g00120.t01	unigene:Vvi.8899	RefSeq:XP_002266683	RefSeq:XP_002266683.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:17166857..17172950

Molecular Weight (calculated)

28215.4 Da

IEP (calculated)

5.627

GRAVY (calculated)

-0.023

Length

262 amino acids

Sequence
(BLAST)

001: MGLLTNRVER SEIRPGDHIY TWRAVFTYSH HGIFVGGSKV VHFTPERNRD SNNGTPSDSY DLVSSIPSTC STFPDCGFRQ PNSGVVLSCL DCFLGKGSLY
101: SFEYGVTPSV FLAKVRGGTC TTATSDPPDA VIHRAMYLLQ NGFGNYDVFQ NNCEDFALYC KTGLLIVDKS GVGRSGQASS VIGAPLAAIL SSPLKLLMPS
201: PVGVATVTAG MYCMSRYATD IGVRTDVIKV AVEELAVNLG WGDVTEEVAE ENDASNRQIV RS

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.