Factsheet for VIT_04s0023g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, vacuole

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
plastid 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome, vacuole
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g01970.t01
VIT_08s0040g01190.t01
VIT_08s0040g01200.t01
VIT_08s0040g01210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	VIT_01s0026g01970.t01	AT1G14340.1	21798944
AT5G06370.1	VIT_08s0040g01190.t01	AT3G55290.1	21798944
AT5G06370.1	VIT_08s0040g01200.t01	AT3G55290.1	21798944
AT5G06370.1	VIT_08s0040g01210.t01	AT3G55290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0105g00270.t01	Wine grape	cytosol	64.24	37.02
CDX81002	Canola	cytosol	56.95	33.08
PGSC0003DMT400055040	Potato	cytosol	56.29	32.95
Solyc01g007110.2.1	Tomato	cytosol	56.29	32.95
Bra005893.1-P	Field mustard	cytosol	56.29	32.69
CDY55757	Canola	cytosol	56.29	32.69
AT5G06370.1	Thale cress	cytosol	54.97	32.05
VIT_04s0069g01180.t01	Wine grape	cytosol	45.03	27.87
EES19605	Sorghum	cytosol	50.33	27.64
TraesCS1A01G275200.1	Wheat	cytosol	47.68	26.09
TraesCS1B01G284400.1	Wheat	cytosol	47.68	26.09
TraesCS1D01G274800.1	Wheat	cytosol	47.68	26.09
VIT_15s0046g00120.t01	Wine grape	cytosol	43.71	25.19
HORVU1Hr1G074130.1	Barley	cytosol	45.7	25.09
VIT_00s0270g00030.t01	Wine grape	cytosol	44.37	24.01

Protein Annotations

ArrayExpress:VIT_04s0023g02850	EMBL:FN594959	EnsemblPlants:VIT_04s0023g02850.t01	EnsemblPlantsGene:VIT_04s0023g02850	InterPro:LRAT-like_dom	PANTHER:PTHR13943
PANTHER:PTHR13943:SF44	PFAM:PF04970	ProteinID:CCB44393	ProteinID:CCB44393.1	UniParc:UPI00021091ED	UniProt:F6GWQ8
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:19432324..19432922

Molecular Weight (calculated)

16448.7 Da

IEP (calculated)

6.476

GRAVY (calculated)

0.005

Length

151 amino acids

Sequence
(BLAST)

001: MSFWNTSYIG VPFTKRGCTN HLSAEPSVAF IINNQDKHVD KEEVTMPCPT CTPPEGGHGV VSSCLNCLLA GDILYRFECS INPTLFLAKA RGGTCTLAVS
101: DPNEIVIHRV TYLLNNGFGC YNVFKNNCED FAIYCKTGLL VIDQGTTGRS G

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.