CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY49093
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	CDX84035	AT1G14340.1	21798944
AT5G06370.1	CDX96860	AT1G14340.1	21798944
AT5G06370.1	CDY49093	AT1G14340.1	21798944
AT5G06370.1	CDY62016	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005893.1-P	Field mustard	cytosol	97.69	97.69
CDY55757	Canola	cytosol	97.31	97.31
AT5G06370.1	Thale cress	cytosol	90.77	91.12
VIT_08s0105g00270.t01	Wine grape	cytosol	79.23	78.63
Solyc01g007110.2.1	Tomato	cytosol	76.92	77.52
PGSC0003DMT400055040	Potato	cytosol	76.92	77.52
KRH32851	Soybean	cytosol	72.31	72.59
KRH72187	Soybean	cytosol	71.92	72.2
EES19605	Sorghum	cytosol	67.69	64.0
TraesCS1A01G275200.1	Wheat	cytosol	66.54	62.68
TraesCS1D01G274800.1	Wheat	cytosol	66.15	62.32
TraesCS1B01G284400.1	Wheat	cytosol	66.15	62.32
HORVU1Hr1G074130.1	Barley	cytosol	65.77	62.18
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	33.08	56.95
CDX78682	Canola	cytosol	47.69	52.1
CDY67201	Canola	cytosol	48.08	51.44
CDX70686	Canola	cytosol	47.31	51.25
CDY55574	Canola	cytosol	49.23	50.59
CDY53737	Canola	cytosol	54.23	50.0
CDY38122	Canola	cytosol	50.38	50.0
CDX85508	Canola	cytosol	40.0	49.76
CDX69451	Canola	cytosol	49.23	49.61
CDY51720	Canola	cytosol	46.54	48.99
CDY07154	Canola	cytosol	45.77	47.79
CDY55575	Canola	cytosol	46.54	47.64
CDY38121	Canola	cytosol	41.15	46.93
CDY37998	Canola	cytosol	47.31	45.72
CDX70687	Canola	plastid	45.0	44.32
CDY72287	Canola	cytosol	43.85	43.68
CDX78683	Canola	cytosol	49.62	42.86

Protein Annotations

EnsemblPlants:CDX81002	EnsemblPlantsGene:GSBRNA2T00134433001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	PFAM:PF04970
ProteinID:CDX81002	ProteinID:CDX81002.1	SUPFAM:SSF54001	UniParc:UPI0004EDF8FD	MapMan:35.2	:

Description

BnaC03g02560D

Coordinates

chrLK031823:-:1222414..1223840

Molecular Weight (calculated)

27924.7 Da

IEP (calculated)

8.158

GRAVY (calculated)

0.157

Length

260 amino acids

Sequence
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDGRV IHFTRRGQEV GTGTILDLVL VSSGPSRAHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LAKARGGTCT LAVSDPNEIT VHRANHLLRN GFGCYDVFKN NCEDFAIYCK TGLLVLEGRM TMGQSGQAVS IIGGPIAAVL STPMRLVTTN
201: IYGMAATAVS VYCASRYATD IGMRADVAKV EVEDLTRRLS VGLFQVIEPP VAAVALPTTS

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.