Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78682 | Canola | cytosol | 93.75 | 94.54 |
| CDY38121 | Canola | cytosol | 62.5 | 65.79 |
| CDY72287 | Canola | cytosol | 67.5 | 62.07 |
| CDY67201 | Canola | cytosol | 61.25 | 60.49 |
| CDX69451 | Canola | cytosol | 62.08 | 57.75 |
| CDX85508 | Canola | cytosol | 50.0 | 57.42 |
| CDY55574 | Canola | cytosol | 60.0 | 56.92 |
| VIT_04s0069g01180.t01 | Wine grape | cytosol | 57.08 | 56.15 |
| CDY38122 | Canola | cytosol | 61.25 | 56.11 |
| KRG98048 | Soybean | cytosol | 55.42 | 54.73 |
| KRG98046 | Soybean | cytosol | 32.92 | 52.67 |
| CDY53737 | Canola | cytosol | 61.25 | 52.13 |
| GSMUA_Achr7P05990_001 | Banana | cytosol | 54.17 | 51.18 |
| KRH30736 | Soybean | cytosol, peroxisome, plastid | 42.08 | 50.5 |
| CDX70687 | Canola | plastid | 55.42 | 50.38 |
| CDY55575 | Canola | cytosol | 52.5 | 49.61 |
| Solyc02g081580.2.1 | Tomato | cytosol | 54.58 | 48.52 |
| PGSC0003DMT400045756 | Potato | cytosol | 53.75 | 47.78 |
| CDX78683 | Canola | cytosol | 59.58 | 47.51 |
| CDX81002 | Canola | cytosol | 51.25 | 47.31 |
| KXG36301 | Sorghum | cytosol | 54.58 | 46.62 |
| KRH30737 | Soybean | cytosol | 48.75 | 46.61 |
| CDY55757 | Canola | cytosol | 50.42 | 46.54 |
| Os05t0310600-01 | Rice | cytosol | 53.75 | 45.91 |
| VIT_00s0270g00030.t01 | Wine grape | cytosol | 51.25 | 44.09 |
| Zm00001d021614_P001 | Maize | mitochondrion | 55.42 | 43.32 |
| CDY51720 | Canola | cytosol | 44.58 | 43.32 |
| HORVU5Hr1G043560.3 | Barley | mitochondrion | 52.5 | 42.14 |
| TraesCS5D01G142500.1 | Wheat | mitochondrion | 52.92 | 40.58 |
| CDY07154 | Canola | cytosol | 42.08 | 40.56 |
| CDY37998 | Canola | cytosol | 44.58 | 39.78 |
| TraesCS5A01G135900.1 | Wheat | mitochondrion | 52.5 | 36.31 |
| KRG98047 | Soybean | cytosol, golgi, peroxisome | 11.25 | 24.32 |
Protein Annotations
| EnsemblPlants:CDX70686 | EnsemblPlantsGene:GSBRNA2T00140549001 | Gene3D:3.90.1720.10 | InterPro:LRAT-like_dom | KEGG:00261+3.4.-.- | KEGG:00310+3.4.-.- |
| KEGG:00550+3.4.-.- | KEGG:00780+3.4.-.- | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF41 | PFAM:PF04970 | ProteinID:CDX70686 |
| ProteinID:CDX70686.1 | UniParc:UPI0004EF3AAB | MapMan:35.2 | : | : | : |
Description
BnaC03g07700D
Coordinates
chrLK031791:-:1543498..1544365
Molecular Weight (calculated)
25921.9 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.052
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MESILLEKIG LFSNKISKDD LKAGDHIYSW RNAYIYSHHG IYIGDGKVIH FTRGGGLEIG TGTFLDKLIV SSITNHGGDN PCPNCGGKQS NTHGVISSCL
101: DCFLAGGDLL RFEYSVSPAL FMSKLRGGTC TTAASDPSEE VISRAEFLLL RNGFGEYHVF ENNCEDFAMY CKTGLVVGRS YVLGRSGQVN SVSAAACVAR
201: MVSPWASNAI RLCSDVGMRK DAAKVPVESL VARFNQAKES
101: DCFLAGGDLL RFEYSVSPAL FMSKLRGGTC TTAASDPSEE VISRAEFLLL RNGFGEYHVF ENNCEDFAMY CKTGLVVGRS YVLGRSGQVN SVSAAACVAR
201: MVSPWASNAI RLCSDVGMRK DAAKVPVESL VARFNQAKES
001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.