CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70686	Canola	cytosol	94.54	93.75
CDY38121	Canola	cytosol	63.03	65.79
CDY72287	Canola	cytosol	67.65	61.69
CDY67201	Canola	cytosol	60.08	58.85
CDX85508	Canola	cytosol	50.0	56.94
VIT_04s0069g01180.t01	Wine grape	cytosol	57.56	56.15
KRG98048	Soybean	cytosol	56.72	55.56
CDX69451	Canola	cytosol	60.08	55.43
CDY55574	Canola	cytosol	58.82	55.34
CDY38122	Canola	cytosol	60.08	54.58
KRG98046	Soybean	cytosol	34.03	54.0
CDY53737	Canola	cytosol	62.18	52.48
KRH30736	Soybean	cytosol, peroxisome, plastid	43.28	51.5
GSMUA_Achr7P05990_001	Banana	cytosol	54.62	51.18
CDX70687	Canola	plastid	55.88	50.38
CDY55575	Canola	cytosol	52.52	49.21
Solyc02g081580.2.1	Tomato	cytosol	55.46	48.89
CDX78683	Canola	cytosol	60.92	48.17
PGSC0003DMT400045756	Potato	cytosol	54.62	48.15
CDX81002	Canola	cytosol	52.1	47.69
KRH30737	Soybean	cytosol	50.0	47.41
KXG36301	Sorghum	cytosol	55.46	46.98
CDY55757	Canola	cytosol	51.26	46.92
Os05t0310600-01	Rice	cytosol	53.36	45.2
VIT_00s0270g00030.t01	Wine grape	cytosol	52.1	44.44
CDY51720	Canola	cytosol	45.8	44.13
Zm00001d021614_P001	Maize	mitochondrion	55.46	43.0
HORVU5Hr1G043560.3	Barley	mitochondrion	52.52	41.81
CDY07154	Canola	cytosol	43.28	41.37
TraesCS5D01G142500.1	Wheat	mitochondrion	52.94	40.26
CDY37998	Canola	cytosol	45.38	40.15
TraesCS5A01G135900.1	Wheat	mitochondrion	52.52	36.02
KRG98047	Soybean	cytosol, golgi, peroxisome	11.76	25.23

Protein Annotations

EnsemblPlants:CDX78682	EnsemblPlantsGene:GSBRNA2T00130107001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDX78682	ProteinID:CDX78682.1	SUPFAM:SSF54001	UniParc:UPI0004EEB980	MapMan:35.2	:

Description

BnaA03g05940D

Coordinates

chrLK031815:-:1814936..1815965

Molecular Weight (calculated)

25734.6 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.055

Length

238 amino acids

Sequence
(BLAST)

001: MESILLEKIG LFSNKISKDD LKPGDHIYSW RNAYIYSHHG IYIGDGKVIH FTRGGGLEIG TGTFLDKLIV SSITNHRGDN PCPNCGGKQS NTHGVISSCL
101: DCFLSGGDLL RFEYSVSPAL FMSKLRGGTC TTAASDPSEE VISRAEFLLL RNGFGEYHVF ENNCEDFAMY CKTGLVVGRS YVLGRSGQAN SVSAAACVAR
201: MVSPWASNAI RLCSDVGMRS DAVKVPVESL VDTLAKES

Best Arabidopsis Sequence Match ( AT5G16330.1 )
(BLAST)

001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.