CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67201	Canola	cytosol	82.95	88.07
CDY55574	Canola	cytosol	82.56	84.19
Bra008623.1-P	Field mustard	cytosol	84.88	75.26
CDY38122	Canola	cytosol	70.93	69.85
CDX85508	Canola	cytosol	55.81	68.9
CDX70686	Canola	cytosol	57.75	62.08
VIT_04s0069g01180.t01	Wine grape	cytosol	56.98	60.25
CDX78682	Canola	cytosol	55.43	60.08
AT5G16360.1	Thale cress	cytosol	63.18	57.6
AT5G16330.1	Thale cress	cytosol	53.88	57.44
KRG98048	Soybean	cytosol	53.49	56.79
CDY38121	Canola	cytosol	49.22	55.7
GSMUA_Achr7P05990_001	Banana	cytosol	53.88	54.72
CDX70687	Canola	plastid	55.04	53.79
Solyc02g081580.2.1	Tomato	cytosol	56.2	53.7
KRG98046	Soybean	cytosol	31.01	53.33
CDX78683	Canola	cytosol	61.63	52.82
CDY55575	Canola	cytosol	51.16	51.97
PGSC0003DMT400045756	Potato	cytosol	54.26	51.85
CDY53737	Canola	cytosol	56.59	51.77
CDY72287	Canola	cytosol	52.33	51.72
KRH30736	Soybean	cytosol, peroxisome, plastid	39.92	51.5
KXG36301	Sorghum	cytosol	54.26	49.82
CDX81002	Canola	cytosol	49.61	49.23
CDY55757	Canola	cytosol	49.22	48.85
KRH30737	Soybean	cytosol	47.29	48.61
VIT_00s0270g00030.t01	Wine grape	cytosol	52.33	48.39
Os05t0310600-01	Rice	cytosol	50.39	46.26
CDY51720	Canola	cytosol	44.19	46.15
HORVU5Hr1G043560.3	Barley	mitochondrion	53.1	45.82
Zm00001d021614_P001	Maize	mitochondrion	54.26	45.6
CDY07154	Canola	cytosol	43.41	44.98
TraesCS5D01G142500.1	Wheat	mitochondrion	53.1	43.77
CDY37998	Canola	cytosol	43.8	42.01
TraesCS5A01G135900.1	Wheat	mitochondrion	53.88	40.06
KRG98047	Soybean	cytosol, golgi, peroxisome	10.47	24.32

Protein Annotations

EnsemblPlants:CDX69451	EnsemblPlantsGene:GSBRNA2T00135429001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDX69451	ProteinID:CDX69451.1	SEG:seg	SUPFAM:SSF54001	UniParc:UPI0004EF23E8	MapMan:35.2

Description

BnaA10g18000D

Coordinates

chrLK031790:+:296814..298011

Molecular Weight (calculated)

27809.1 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.055

Length

258 amino acids

Sequence
(BLAST)

001: MGLFSNKISR DELKAGDHIY SWRSYIYSHH GIYVGDGKVI HFTRRGGLEI GTGTYLDKII QFSVPRHGGD NPCPNCGDQS ILDGVISSCL DCFLAGGSLY
101: LFQYDVSKAI LVAKQRGGTC TTAPSDPPEE VVHRARYLLS GNGFGEYHLL DNNCEDFAIY CKTGLLVFSV TKSGSSSQVN SVCAAGGLAS LTLRFLGVGR
201: AAAMAVAEYS KYCIGRVAYD VGVRKDVRKV PVEELAALLA VLEGSLDNLD STNSDKNK

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.