CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72287	Canola	cytosol	83.33	72.8
CDX78682	Canola	cytosol	65.79	63.03
CDX70686	Canola	cytosol	65.79	62.5
CDY67201	Canola	cytosol	55.26	51.85
VIT_04s0069g01180.t01	Wine grape	cytosol	54.82	51.23
KRG98048	Soybean	cytosol	53.51	50.21
CDY55574	Canola	cytosol	55.7	50.2
KRG98046	Soybean	cytosol	32.89	50.0
CDX69451	Canola	cytosol	55.7	49.22
CDY38122	Canola	cytosol	55.26	48.09
CDX85508	Canola	cytosol	43.86	47.85
CDX70687	Canola	plastid	53.51	46.21
Solyc02g081580.2.1	Tomato	cytosol	54.39	45.93
PGSC0003DMT400045756	Potato	cytosol	54.39	45.93
CDY55575	Canola	cytosol	50.0	44.88
GSMUA_Achr7P05990_001	Banana	cytosol	49.12	44.09
KRH30736	Soybean	cytosol, peroxisome, plastid	38.16	43.5
CDY53737	Canola	cytosol	53.51	43.26
KRH30737	Soybean	cytosol	47.37	43.03
VIT_00s0270g00030.t01	Wine grape	cytosol	52.63	43.01
CDX78683	Canola	cytosol	55.26	41.86
KXG36301	Sorghum	cytosol	50.88	41.28
CDY55757	Canola	cytosol	46.93	41.15
CDX81002	Canola	cytosol	46.93	41.15
CDY51720	Canola	cytosol	42.98	39.68
Os05t0310600-01	Rice	cytosol	48.68	39.5
CDY37998	Canola	cytosol	45.18	38.29
CDY07154	Canola	cytosol	41.67	38.15
Zm00001d021614_P001	Maize	mitochondrion	51.32	38.11
HORVU5Hr1G043560.3	Barley	mitochondrion	49.56	37.79
TraesCS5D01G142500.1	Wheat	mitochondrion	49.56	36.1
TraesCS5A01G135900.1	Wheat	mitochondrion	49.12	32.28
KRG98047	Soybean	cytosol, golgi, peroxisome	12.28	25.23

Protein Annotations

EnsemblPlants:CDY38121	EnsemblPlantsGene:GSBRNA2T00065401001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDY38121	ProteinID:CDY38121.1	SUPFAM:SSF54001	UniParc:UPI0004EEADB6	UniProt:A0A078HKH0	MapMan:35.2

Description

BnaC02g06520DBnaC02g06520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKH0]

Coordinates

chrLK032416:+:221461..223256

Molecular Weight (calculated)

25006.3 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.033

Length

228 amino acids

Sequence
(BLAST)

001: MGQFSTNKIS RDDLKPGDHI YAWRKAYIYS HHGIYIGDGK VIHFTRGDGP SVREGSVLDK IIVSSVTNHG GYNPCPNCGK RSNTRGVISS CLDCFLARGD
101: LHLFKYNVSL ATFMTKLRGG TCTTAPSDPS DEVISRAKFL LMINGFGDYH LFKNNCEDFA MYCKTSLVVG QSYVLGRNGQ ANTVGLAACV ARMLTPLVRN
201: VIRLFSDVGV VLLAPEGTRF GNKIIIIK

Best Arabidopsis Sequence Match ( AT5G16330.1 )
(BLAST)

001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.