CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78683	Canola	cytosol	69.7	61.13
CDY67201	Canola	cytosol	53.03	57.61
AT5G16330.1	Thale cress	cytosol	51.89	56.61
CDX78682	Canola	cytosol	50.38	55.88
CDX70686	Canola	cytosol	50.38	55.42
CDX69451	Canola	cytosol	53.79	55.04
CDY38121	Canola	cytosol	46.21	53.51
CDY38122	Canola	cytosol	53.03	53.44
CDY55574	Canola	cytosol	50.76	52.96
CDX85508	Canola	cytosol	40.91	51.67
KRG98048	Soybean	cytosol	46.97	51.03
VIT_04s0069g01180.t01	Wine grape	cytosol	46.21	50.0
KRG98046	Soybean	cytosol	28.41	50.0
CDY72287	Canola	cytosol	48.11	48.66
AT5G16360.1	Thale cress	cytosol	50.76	47.35
CDY53737	Canola	cytosol	50.0	46.81
CDY55575	Canola	cytosol	43.94	45.67
GSMUA_Achr7P05990_001	Banana	cytosol	43.94	45.67
CDX81002	Canola	cytosol	44.32	45.0
KRH30736	Soybean	cytosol, peroxisome, plastid	34.09	45.0
Solyc02g081580.2.1	Tomato	cytosol	45.83	44.81
KRH30737	Soybean	cytosol	42.42	44.62
CDY55757	Canola	cytosol	43.18	43.85
PGSC0003DMT400045756	Potato	cytosol	44.32	43.33
KXG36301	Sorghum	cytosol	44.32	41.64
VIT_00s0270g00030.t01	Wine grape	cytosol	43.18	40.86
CDY51720	Canola	cytosol	36.74	39.27
Os05t0310600-01	Rice	cytosol	41.67	39.15
Zm00001d021614_P001	Maize	mitochondrion	44.7	38.44
CDY07154	Canola	cytosol	35.98	38.15
HORVU5Hr1G043560.3	Barley	mitochondrion	42.8	37.79
TraesCS5D01G142500.1	Wheat	mitochondrion	42.8	36.1
CDY37998	Canola	cytosol	36.74	36.06
TraesCS5A01G135900.1	Wheat	mitochondrion	42.8	32.56
KRG98047	Soybean	cytosol, golgi, peroxisome	10.23	24.32

Protein Annotations

EnsemblPlants:CDX70687	EnsemblPlantsGene:GSBRNA2T00140550001	Gene3D:3.90.1720.10	GO:A0A078C1T4	InterPro:LRAT-like_dom	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDX70687	ProteinID:CDX70687.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEBBD1	MapMan:35.2

Description

BnaC03g07710D

Coordinates

chrLK031791:-:1545281..1547731

Molecular Weight (calculated)

29172.1 Da

IEP (calculated)

8.295

GRAVY (calculated)

0.067

Length

264 amino acids

Sequence
(BLAST)

001: MKNIFFQIRS PLYHPSQYSN FCPKSKHTSR SVDSFSHCNW NSFISFLKMG FLSQQISRDE LKPGDHIYSW RRAYIYSHHG IYVGNGDVIH FTCGGGLETR
101: TGTFVDNVIV SSVPNHGGDN PCPNCGDQSN LNGVISSCLD CFLAGGNLYL FEYGVSGPIF MAKPRGGICT TAVSDSSDET VHRARYLLSK KNGFGAYDLL
201: KNNCEDFAIY CKTGLIVLSK LGSSGQANSC LSVGWLFRGL LVLVLWLWRG MVTTVMVVCV LILV

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.