CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67201	Canola	cytosol	83.0	86.42
CDX69451	Canola	cytosol	84.19	82.56
Bra008623.1-P	Field mustard	cytosol	79.05	68.73
CDX85508	Canola	cytosol	56.52	68.42
CDY38122	Canola	cytosol	69.57	67.18
CDX70686	Canola	cytosol	56.92	60.0
CDX78682	Canola	cytosol	55.34	58.82
VIT_04s0069g01180.t01	Wine grape	cytosol	56.52	58.61
KRG98048	Soybean	cytosol	54.55	56.79
AT5G16330.1	Thale cress	cytosol	54.15	56.61
AT5G16360.1	Thale cress	cytosol	62.45	55.83
CDY38121	Canola	cytosol	50.2	55.7
Solyc02g081580.2.1	Tomato	cytosol	57.31	53.7
GSMUA_Achr7P05990_001	Banana	cytosol	52.96	52.76
KRG98046	Soybean	cytosol	31.23	52.67
CDY72287	Canola	cytosol	54.15	52.49
PGSC0003DMT400045756	Potato	cytosol	55.73	52.22
CDY55575	Canola	cytosol	51.78	51.57
KRH30736	Soybean	cytosol, peroxisome, plastid	40.71	51.5
CDX78683	Canola	cytosol	60.47	50.83
CDX70687	Canola	plastid	52.96	50.76
CDY53737	Canola	cytosol	56.13	50.35
CDX81002	Canola	cytosol	50.59	49.23
CDY55757	Canola	cytosol	50.2	48.85
KXG36301	Sorghum	cytosol	53.75	48.4
KRH30737	Soybean	cytosol	47.83	48.21
VIT_00s0270g00030.t01	Wine grape	cytosol	52.57	47.67
CDY51720	Canola	cytosol	45.06	46.15
Os05t0310600-01	Rice	cytosol	50.99	45.91
HORVU5Hr1G043560.3	Barley	mitochondrion	53.75	45.48
CDY07154	Canola	cytosol	44.27	44.98
Zm00001d021614_P001	Maize	mitochondrion	54.15	44.63
TraesCS5D01G142500.1	Wheat	mitochondrion	53.36	43.13
CDY37998	Canola	cytosol	45.85	43.12
TraesCS5A01G135900.1	Wheat	mitochondrion	52.96	38.62
KRG98047	Soybean	cytosol, golgi, peroxisome	10.67	24.32

Protein Annotations

EnsemblPlants:CDY55574	EnsemblPlantsGene:GSBRNA2T00017037001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDY55574	ProteinID:CDY55574.1	SUPFAM:SSF54001	UniParc:UPI0004EE742D	UniProt:A0A078IVL5	MapMan:35.2

Description

BnaC09g41490DBnaC09g41490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVL5]

Coordinates

chrLK033413:-:34978..36155

Molecular Weight (calculated)

27307.5 Da

IEP (calculated)

7.670

GRAVY (calculated)

-0.049

Length

253 amino acids

Sequence
(BLAST)

001: MGLFSNKISR DELKAGDHIY SWRSYIYSHH GIYVGDGKVI HFTRRGGLEI GTGTYLDNII QISVPRHGDN PCPNCGDQSI LDGVISSCLD CFLAGGSLYL
101: FQYDVSKAVL VAKQRGGTCT TAPSDPPEEV VHRAKCLLWS NGFGEYHLLD NNCEDFAIYC KTGLLVFSVT KSGSSSQVNA VCAAGGVASL ALRYLGVGRT
201: AGQAASLAVN YCIGRVAYDV GVRKDVRKVP VEELATLMAV RNILDNTNSD KNK

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.